RetrogeneDB ID: | retro_btau_333 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:20306148..20306520(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFS6 | ||
Ensembl ID: | ENSBTAG00000009914 | ||
Aliases: | NDUFS6, IP13 | ||
Description: | NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P23934] |
Percent Identity: | 60.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAAVLTFLRFLGRGGAVTRGLP-GGARCFGVRTSPTGEKVTHTGQVYDDGDYRKVRFVGRQKEVNENFAI |
M.A..TFL..L..G..V...LP.GG.RCF.V..S..GE.VTHTGQ.YD..DYR...FVG.QKEVNE.... | |
Retrocopy | MVAAVTFLWLLDQGSLVAWSLP>GGTRCFSVQSSLAGEEVTHTGQFYDHNDYRQLPFVGCQKEVNESSTT |
Parental | DLIAEQPVSQVGSRVISCDGGGGALGHP-RVYINLDKETKTGTCGYCGLQFRQQHH |
DLIAEQPVS.V...V.SCD......G.P..VYIN.DKETK..TC.YCGLQFRQ.HH | |
Retrocopy | DLIAEQPVSEVRRQVVSCDRNEEIQGQP<MVYINSDKETKEATCSYCGLQFRQHHH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 3 .24 RPM |
ERP005899_muscle | 0 .00 RPM | 54 .37 RPM |
SRP017611_brain | 0 .05 RPM | 16 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 44 .34 RPM |
SRP017611_liver | 0 .00 RPM | 18 .42 RPM |
SRP030211_testis | 0 .24 RPM | 22 .64 RPM |