RetrogeneDB ID: | retro_ocun_132 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:69007918..69008446(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000001692 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000023198 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.79 % |
Parental protein coverage: | 95.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP |
K.....FG.KEMRILM.GLDAAGKTTILYKLKLG..VTTIPT.GFNVETV.YKN..F.VWDVGGQDKIRP | |
Retrocopy | KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP |
Parental | LWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLH |
LWRHY...TQGLIFVVD..DR.R..EAR.EL.R.....E.RDA..L.F.NKQDLP.AM...EI..KLGL. | |
Retrocopy | LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT |
Parental | SLRQRSWYIQATCATSGDGLYEGLDWLSNQLKN |
..R.R.WY.Q..CATSGDGLYEGL.WL....K. | |
Retrocopy | RIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 15 .34 RPM | 11 .37 RPM |
SRP017611_kidney | 34 .56 RPM | 5 .47 RPM |
SRP017611_liver | 15 .03 RPM | 1 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004184 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006785 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007011 | 1 retrocopy | |
Equus caballus | ENSECAG00000009563 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000019009 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062421 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000824 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014090 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023009 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023198 | 1 retrocopy |
retro_ocun_132 ,
|
Oryctolagus cuniculus | ENSOCUG00000023645 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002503 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019768 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000011685 | 1 retrocopy |