Parental gene: | RPS16, ENSOCUG00000002150 |
| Aliases: | None |
| Description: | ribosomal protein S16 [Source:HGNC Symbol;Acc:10396] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 5:537680..539531(+) |
>ENSOCUG00000002150
TCGGCGAGGGTGGCCCCACGCTTCCCTTTTCCGGTTGTAGCGCCTCGCGGTGAGGATCGCCATAGTTCGGCAGCAGCCAT
GCCGTCCAAGGGCCCGCTACAGTCCGTTCAGGTCTTCGGACGGAAGAAGACAGCCACCGCCGTGGCCCACTGCAAACGGG
GCAACGGGCTGATCAAGGTGAACGGGAGGCCGCTGGAGATGATTGAGCCACGCACGCTGCAGTACAAGCTGCTGGAGCCT
GTTCTGCTCCTTGGCAAGGAGCGCTTTGCTGGCGTGGACATCCGGGTCCGAGTGAAGGGTGGCGGTCACGTGGCTCAGAT
TTATGCGATCCGCCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCATCCAAGAAGGAGA
TCAAAGACATCCTCATCCAGTATGACCGCACCCTGCTGGTCGCTGACCCCCGCCGCTGCGAGTCCAAGAAGTTTGGAGGC
CCCGGTGCCCGTGCTCGCTACCAGAAATCCTACCGATAG
TCGGCGAGGGTGGCCCCACGCTTCCCTTTTCCGGTTGTAGCGCCTCGCGGTGAGGATCGCCATAGTTCGGCAGCAGCCAT
GCCGTCCAAGGGCCCGCTACAGTCCGTTCAGGTCTTCGGACGGAAGAAGACAGCCACCGCCGTGGCCCACTGCAAACGGG
GCAACGGGCTGATCAAGGTGAACGGGAGGCCGCTGGAGATGATTGAGCCACGCACGCTGCAGTACAAGCTGCTGGAGCCT
GTTCTGCTCCTTGGCAAGGAGCGCTTTGCTGGCGTGGACATCCGGGTCCGAGTGAAGGGTGGCGGTCACGTGGCTCAGAT
TTATGCGATCCGCCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCATCCAAGAAGGAGA
TCAAAGACATCCTCATCCAGTATGACCGCACCCTGCTGGTCGCTGACCCCCGCCGCTGCGAGTCCAAGAAGTTTGGAGGC
CCCGGTGCCCGTGCTCGCTACCAGAAATCCTACCGATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 44 .78 RPM |
| SRP017611_kidney | 174 .43 RPM |
| SRP017611_brain | 68 .99 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000014176 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000021093 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000005501 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014170 | possible_ortholog | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000011359 | possible_ortholog | 3 retrogenes | |
| Equus caballus | ENSECAG00000004311 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000010743 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014414 | possible_ortholog | 10 retrogenes | |
| Loxodonta africana | ENSLAFG00000001541 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019370 | possible_ortholog | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000013545 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014388 | possible_ortholog | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004497 | ortholog_one2one | 4 retrogenes | |
| Oreochromis niloticus | ENSONIG00000000006 | ortholog_one2one | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000016930 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019578 | possible_ortholog | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000010712 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000020817 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_371 | 70.45 | 75.58 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_580 | 64.66 | 66.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_632 | 82.99 | 83.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_645 | 58.50 | 82.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_670 | 95.09 | 94.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_837 | 59.84 | 69.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ocun_906 | 96.92 | 75.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ocun_986 | 55.41 | 88.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ocun_1028 | 92.00 | 58.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ocun_1073 | 65.56 | 51.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ocun_1394 | 60.00 | 74.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ocun_1430 | 59.38 | 55.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ocun_1436 | 59.57 | 53.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_ocun_1774 | 70.00 | 67.44 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000002150 retrocopies