RetrogeneDB ID: | retro_fcat_1976 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:38733235..38733709(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010743 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.22 % |
Parental protein coverage: | 96.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PFPVAAPRGEDLLSTFAAMPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLL |
PF.V.A..GE.LLS.F.AM.SKGPLQS.QVF..KK.A.AV.HCK.GNGLIKVNG.PL.MI...TLQY.LL | |
Retrocopy | PFLVVALFGEELLSMFVAMQSKGPLQSMQVFRCKKMARAVVHCK*GNGLIKVNGWPLGMIQSHTLQYRLL |
Parental | EPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA |
EP.LLLGKERFAGV.I.V.VKG.GH.AQIY.I..SISKALVAYYQKYVDEASKKEIKDILIQYD.TLLVA | |
Retrocopy | EPFLLLGKERFAGVNIQVQVKGDGHEAQIYPIC*SISKALVAYYQKYVDEASKKEIKDILIQYDQTLLVA |
Parental | DPRRCESKKFGGPGARAR |
D...CESKKFGGPGA..R | |
Retrocopy | DLWNCESKKFGGPGAHTR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 65 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 189 .63 RPM |
SRP017611_liver | 0 .00 RPM | 90 .27 RPM |