RetrogeneDB ID: | retro_btau_167 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:117506299..117506737(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000001538 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS16 | ||
Ensembl ID: | ENSBTAG00000021093 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S16 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0X6] |
Percent Identity: | 97.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRV |
MPSKGPLQSVQVFG.KKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFA.VDIRV | |
Retrocopy | MPSKGPLQSVQVFGHKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFA-VDIRV |
Parental | RVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR |
RVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDI.IQYDRTLLVADPRRCESKKFGGPGARAR | |
Retrocopy | RVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDIIIQYDRTLLVADPRRCESKKFGGPGARAR |
Parental | YQKSYR |
YQKSYR | |
Retrocopy | YQKSYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .01 RPM | 68 .78 RPM |
ERP005899_muscle | 3 .33 RPM | 852 .60 RPM |
SRP017611_brain | 0 .46 RPM | 69 .34 RPM |
SRP017611_kidney | 1 .07 RPM | 175 .21 RPM |
SRP017611_liver | 0 .98 RPM | 134 .25 RPM |
SRP030211_testis | 0 .43 RPM | 42 .23 RPM |