RetrogeneDB ID: | retro_rnor_1823 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:130498024..130498346(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps16 | ||
Ensembl ID: | ENSRNOG00000019578 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S16 [Source:UniProtKB/Swiss-Prot;Acc:P62250] |
Percent Identity: | 57.27 % |
Parental protein coverage: | 73.97 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LEMIEPRTLQYKLLEPVLLLGKERFAGV-DIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKE |
LE.I.P..LQ.KLL.P.LLL.K....GV.D.RV.VKG..HVAQ.YA..QSISK.LVA.Y...V.EA..KE | |
Retrocopy | LETIKPLSLQLKLLDPALLLDKT*LPGV<DVRVPVKGCDHVAQLYAF*QSISKGLVASYHVLVGEARRKE |
Parental | IKDILIQYDRTLLVADPRRC-ESKKFGGPGARARYQKSYR |
I.D.LI.YD.TLLVA.P..C.....F...GA.A..QKSY. | |
Retrocopy | IRDSLIYYDWTLLVAGPHQC<QVDHFRDTGAYA*FQKSYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 131 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 154 .57 RPM |
SRP017611_liver | 0 .00 RPM | 97 .63 RPM |