RetrogeneDB ID: | retro_mmul_1018 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:20049253..20049690(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000030923 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS16 | ||
Ensembl ID: | ENSMMUG00000019370 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S16 [Source:RefSeq peptide;Acc:NP_001252707] |
Percent Identity: | 75.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLL-LGKERFAGVDIR |
M.SKG.LQ..QVFG.KK.ATAV.H.K..NGLIKVNG.PLEMIE.R.LQYKLLEP.LL.LGKERFAGV.I. | |
Retrocopy | MLSKGLLQYAQVFGCKKRATAVTHGKHSNGLIKVNGWPLEMIELRMLQYKLLEPLLL<LGKERFAGVNIC |
Parental | VRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARA |
V.VKGG.HVAQI.A..QSISKALVAYYQKY.DEASKKEIKD.LIQ.D.TLLVA....CESKKFG..GA.A | |
Retrocopy | VHVKGGSHVAQICAVHQSISKALVAYYQKYMDEASKKEIKDFLIQNDQTLLVAVLLCCESKKFGNSGACA |
Parental | RYQKSYR |
.Y.KSY. | |
Retrocopy | CY*KSYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 21 .63 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 101 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 23 .51 RPM |
SRP007412_heart | 0 .00 RPM | 73 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .54 RPM |
SRP007412_liver | 0 .04 RPM | 143 .10 RPM |
SRP007412_testis | 0 .00 RPM | 22 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2230 |
Gorilla gorilla | retro_ggor_1664 |