Parental gene:

RPS25, ENSOCUG00000017256

Aliases:None
Description:ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018823:491761..493564(-)


>ENSOCUG00000017256
ATGCCGCCCAAGGACGACAAGAAGAAAAAAGATGCCGGAAAGTCGGCCAAGAAAGACAAGGACCCCGTGAACAAGTCTGG
AGGCAAGGCCAAAAAGAAGAAGTGGTCTAAAGGCAAAGTTCGGGACAAGCTCAATAACCTGGTCTTGTTTGACAAAGCTA
CGTACGACAAGCTCTGTAAGGAAGTGCCCAACTACAAGCTCATAACTCCGGCCGTGGTCTCTGAGAGACTGAAGATCCGC
GGGTCCCTGGCCAGGGCAGCCCTGCAGGAGCTCCTGAGTAAAGGACTTATCAAACTGGTTTCAAAGCACAGAGCTCAAGT
GATTTACACCAGAAACACCAAGGGGGGAGATGCCCCAGCTGCCGGTGAAGATGCGTGA

Library Parental gene expression (RPM)
SRP017611_brain 91 .94 RPM
SRP017611_kidney 219 .64 RPM
SRP017611_liver 69 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027772 possible_ortholog 2 retrogenes
retro_btau_203, retro_btau_9,
Callithrix jacchus ENSCJAG00000013691 ortholog_one2many 1 retrogene
retro_cjac_208,
Dasypus novemcinctus ENSDNOG00000007880 ortholog_one2many 7 retrogenes
retro_dnov_1092, retro_dnov_1566, retro_dnov_2219, retro_dnov_2593, retro_dnov_346, retro_dnov_877, retro_dnov_973,
Homo sapiens ENSG00000118181 ortholog_one2one 3 retrogenes
retro_hsap_3371, retro_hsap_3547, retro_hsap_4310,
Gorilla gorilla ENSGGOG00000025540 ortholog_one2one 7 retrogenes
retro_ggor_1601, retro_ggor_1666, retro_ggor_1979, retro_ggor_2395, retro_ggor_2880, retro_ggor_337, retro_ggor_634,
Latimeria chalumnae ENSLACG00000017531 possible_ortholog 4 retrogenes
retro_lcha_101, retro_lcha_118, retro_lcha_50, retro_lcha_72,
Macropus eugenii ENSMEUG00000014185 possible_ortholog 3 retrogenes
retro_meug_1181, retro_meug_1562, retro_meug_174,
Mus musculus ENSMUSG00000009927 possible_ortholog 15 retrogenes
retro_mmus_128, retro_mmus_1368, retro_mmus_1455, retro_mmus_1760, retro_mmus_1769, retro_mmus_1788, retro_mmus_2375, retro_mmus_2393, retro_mmus_2641, retro_mmus_2700, retro_mmus_2797, retro_mmus_3218, retro_mmus_336, retro_mmus_3523, retro_mmus_880,
Otolemur garnettii ENSOGAG00000007265 possible_ortholog 3 retrogenes
retro_ogar_220, retro_ogar_257, retro_ogar_32,
Ochotona princeps ENSOPRG00000016194 possible_ortholog 9 retrogenes
retro_opri_1099, retro_opri_1204, retro_opri_256, retro_opri_320, retro_opri_393, retro_opri_493, retro_opri_64, retro_opri_854, retro_opri_873,
Pongo abelii ENSPPYG00000025915 ortholog_one2one 6 retrogenes
retro_pabe_1889, retro_pabe_1971, retro_pabe_2930, retro_pabe_3507, retro_pabe_71, retro_pabe_94,
Pan troglodytes ENSPTRG00000004361 ortholog_one2one 10 retrogenes
retro_ptro_1368, retro_ptro_1494, retro_ptro_1579, retro_ptro_1722, retro_ptro_1935, retro_ptro_2291, retro_ptro_2411, retro_ptro_245, retro_ptro_2918, retro_ptro_536,
Sorex araneus ENSSARG00000002284 ortholog_one2one 4 retrogenes
retro_sara_21, retro_sara_212, retro_sara_43, retro_sara_542,
Tupaia belangeri ENSTBEG00000010244 ortholog_one2one 16 retrogenes
retro_tbel_1592, retro_tbel_1823, retro_tbel_1849, retro_tbel_22, retro_tbel_2651, retro_tbel_2744, retro_tbel_3106, retro_tbel_3107, retro_tbel_3499, retro_tbel_374, retro_tbel_3871, retro_tbel_3877, retro_tbel_4239, retro_tbel_4434, retro_tbel_444, retro_tbel_4464,
Tarsius syrichta ENSTSYG00000005422 ortholog_one2one 15 retrogenes
retro_tsyr_1050, retro_tsyr_1098, retro_tsyr_1125, retro_tsyr_1230, retro_tsyr_1252, retro_tsyr_1454, retro_tsyr_154, retro_tsyr_1558, retro_tsyr_2081, retro_tsyr_358, retro_tsyr_414, retro_tsyr_428, retro_tsyr_570, retro_tsyr_859, retro_tsyr_873,
Vicugna pacos ENSVPAG00000000266 possible_ortholog 4 retrogenes
retro_vpac_106, retro_vpac_118, retro_vpac_337, retro_vpac_546,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_291 96.00 100.00
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2. retro_ocun_298 71.19 93.60
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3. retro_ocun_548 56.31 79.20
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4. retro_ocun_623 66.07 87.20
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5. retro_ocun_856 59.66 92.00
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6. retro_ocun_978 68.50 100.00
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7. retro_ocun_1166 97.60 100.00
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8. retro_ocun_1231 61.11 97.60
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9. retro_ocun_1319 89.76 100.00
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10. retro_ocun_1553 75.00 94.40
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11. retro_ocun_1761 75.00 91.20
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Download FASTA sequences of all ENSOCUG00000017256 retrocopies