RetrogeneDB ID: | retro_tsyr_1125 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_315336:81..440(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSTSYG00000005422 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 84.43 % |
Parental protein coverage: | 96.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLC-KEVPNYKLIT |
MPPKDDKKKKD..K.AKK..D.V.KSGGKAKKK.WSK.KVRDKLNNLVLFDKATYDKL..KEVPNYKLIT | |
Retrocopy | MPPKDDKKKKDTRK*AKKEEDSVSKSGGKAKKK-WSKSKVRDKLNNLVLFDKATYDKLL<KEVPNYKLIT |
Parental | PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAA |
PAVVSERLKI..SLA..ALQELLSKGLIKLVSK.RAQ.IYTRNTKGG.AP.A | |
Retrocopy | PAVVSERLKICCSLAGVALQELLSKGLIKLVSKYRAQAIYTRNTKGGNAPVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Homo sapiens | ENSG00000118181 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000025540 | 7 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017256 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025915 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000004361 | 10 retrocopies | |
Sorex araneus | ENSSARG00000002284 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000010244 | 16 retrocopies | |
Tarsius syrichta | ENSTSYG00000005422 | 15 retrocopies |