Parental gene:

TPT1, ENSOGAG00000012523

Aliases:None
Description:tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873562.1:3388450..3392641(-)


>ENSOGAG00000012523
ATGATTATCTACCGGGACCTCATCAGCCACGATGAGATGTTCTCCGACATTTACAAGATCCGAGAGATCGCGGACGGCCT
GTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTCATTGGTGGAAATGCTTCCG
CTGAAGGACCTGAGGGCGAAGGTACCGAAAGCACAGTTGTCACTGGTGTTGATATTGTCATGAACCATCACTTGCAGGAA
ACCAGCTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAGTCAATCAAAGGCAAACTTGAAGAACAGAG
ACCAGAAAGAGTAAAACCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTGGCTAATTTCAAAAACTACCAGT
TCTTTATTGGTGAAAACATGAATCCAGATGGTATGGTTGCTCTCCTGGACTACCGTGAGGATGGTGTGACCCCATATATG
ATTTTCTTTAAGGATGGTTTAGAAATGGAAAAATGTTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2one 2 retrogenes
retro_acar_156, retro_acar_58,
Bos taurus ENSBTAG00000010156 ortholog_one2many 2 retrogenes
retro_btau_21, retro_btau_235,
Callithrix jacchus ENSCJAG00000019229 ortholog_one2many 2 retrogenes
retro_cjac_1786, retro_cjac_314,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2one 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2one 2 retrogenes
retro_lcha_24, retro_lcha_34,
Loxodonta africana ENSLAFG00000021740 possible_ortholog 7 retrogenes
retro_lafr_1008, retro_lafr_1195, retro_lafr_1211, retro_lafr_1247, retro_lafr_347, retro_lafr_484, retro_lafr_883,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Nomascus leucogenys ENSNLEG00000002108 ortholog_one2one 8 retrogenes
retro_nleu_1262, retro_nleu_1281, retro_nleu_1637, retro_nleu_2127, retro_nleu_2539, retro_nleu_2540, retro_nleu_368, retro_nleu_9,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,
Tupaia belangeri ENSTBEG00000013539 possible_ortholog 25 retrogenes
retro_tbel_1009, retro_tbel_1556, retro_tbel_1634, retro_tbel_1724, retro_tbel_1725, retro_tbel_2086, retro_tbel_2100, retro_tbel_2265, retro_tbel_2278, retro_tbel_2464, retro_tbel_2550, retro_tbel_2767, retro_tbel_3238, retro_tbel_3354, retro_tbel_3403, retro_tbel_3410, retro_tbel_3592, retro_tbel_3888, retro_tbel_4226, retro_tbel_4400, retro_tbel_4526, retro_tbel_459, retro_tbel_4641, retro_tbel_4733, retro_tbel_830,
Vicugna pacos ENSVPAG00000008472 ortholog_one2many 5 retrogenes
retro_vpac_1, retro_vpac_101, retro_vpac_159, retro_vpac_539, retro_vpac_552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ogar_344 97.11 100.00
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2. retro_ogar_350 88.89 62.21
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3. retro_ogar_622 92.39 52.91
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4. retro_ogar_746 83.21 77.91
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5. retro_ogar_906 63.78 72.09
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6. retro_ogar_1141 90.70 100.00
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7. retro_ogar_1249 78.98 100.00
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8. retro_ogar_1538 85.05 62.21
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9. retro_ogar_1682 76.25 91.28
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10. retro_ogar_1754 95.95 100.00
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11. retro_ogar_2193 88.62 96.51
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12. retro_ogar_2225 92.31 52.91
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13. retro_ogar_2298 91.07 65.12
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14. retro_ogar_2331 97.09 59.88
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15. retro_ogar_2594 68.84 77.91
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16. retro_ogar_2668 90.68 93.02
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17. retro_ogar_2819 63.49 70.35
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18. retro_ogar_2893 94.50 62.79
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19. retro_ogar_2944 70.86 100.00
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20. retro_ogar_3503 93.64 100.00
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Download FASTA sequences of all ENSOGAG00000012523 retrocopies