RetrogeneDB ID: | retro_dnov_1705 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_271529:481..963(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSDNOG00000000653 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 91.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EMFSDIYKIREIADGLCLEVEGKMVSRTEGSIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHQE-- |
EMFS..YKI.EIADGLCLEVEGKMVSRTEGSIDD.LIG.NAS.EGPE.EGT.S.VITGVDIVMNHH.... | |
Retrocopy | EMFSNTYKIWEIADGLCLEVEGKMVSRTEGSIDDLLIG*NASIEGPEVEGTKSMVITGVDIVMNHHLQVT |
Parental | PFTKE-AYKKYIKDYMKSIKGKLEEQRPERVKSFMTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLD |
.FT.E..Y.K.IKDYMKSIKGKLEEQRPERVKSFMTGAAEQIKHILANFNN.QFF..ENMNPDGMVALLD | |
Retrocopy | SFTEE<SYSKCIKDYMKSIKGKLEEQRPERVKSFMTGAAEQIKHILANFNNCQFFVSENMNPDGMVALLD |
Parental | YREDGVTPYMIFFKDGLEMEKC |
Y.E.GVT.Y.IFFK.GLEMEKC | |
Retrocopy | YCEYGVTLYIIFFKNGLEMEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 181 .44 RPM |
SRP012922_cerebellum | 0 .00 RPM | 63 .51 RPM |
SRP012922_heart | 0 .00 RPM | 91 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 265 .86 RPM |
SRP012922_liver | 0 .00 RPM | 112 .23 RPM |
SRP012922_lung | 0 .00 RPM | 210 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 308 .78 RPM |
SRP012922_spleen | 0 .11 RPM | 310 .30 RPM |