RetrogeneDB ID: | retro_dnov_417 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_452:190973..191279(+) | ||
Located in intron of: | ENSDNOG00000014522 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSDNOG00000000653 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 58.72 % |
Parental protein coverage: | 58.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | LIGGNASA-EGPE-GEGTESTVITGVDIVMN-HHQE-PFTKEAYKKYIKDYMKSIKGKL-EEQRPERV-K |
L.GG.ASA..GP...EG...T...G.DIV.N.H.QE.P.............MKSIKG.L.E.Q..ERV.. | |
Retrocopy | LTGGTASA<QGPR<AEGIAGTAPAGADIVINHHSQE>PASQKKPTRST*KMMKSIKGQL<EDQSSERV<N |
Parental | SFMTGAAEQIKHILANFNNYQFFIGENMNPDG-MVALLD |
SFMTGAAEQI.HILA.FNN..FFIGENM.PDG..VALLD | |
Retrocopy | SFMTGAAEQI-HILAIFNNHLFFIGENMSPDGVVVALLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 181 .44 RPM |
SRP012922_cerebellum | 0 .00 RPM | 63 .51 RPM |
SRP012922_heart | 0 .00 RPM | 91 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 265 .86 RPM |
SRP012922_liver | 0 .00 RPM | 112 .23 RPM |
SRP012922_lung | 0 .00 RPM | 210 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 308 .78 RPM |
SRP012922_spleen | 0 .00 RPM | 310 .30 RPM |