RetrogeneDB ID: | retro_mdom_9 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:449755400..449755919(-) | ||
Located in intron of: | ENSMODG00000013875 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000023392 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000014940 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 82.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIIYRDLISHDEMFSDIYKIREIANGLCLEVEGKMVSRTEGTIDDSLIGGNASAEGPEGEGTDATVITGV |
MIIYRDLISHDEMFSDIYKIREIANGLCLEVEGKMVSRTEGTIDDSLIGGNASAEGPEGEGTDATVITGV | |
Retrocopy | MIIYRDLISHDEMFSDIYKIREIANGLCLEVEGKMVSRTEGTIDDSLIGGNASAEGPEGEGTDATVITGV |
Parental | DIVINHHLQETSFTKESYKKYIKDYMKSIKGRLEEQKPDRVKPFMTGATEQIKHILANFNNYQFFIGENM |
DIVINHHLQETSFTKESYKKYIKDYMKSIKGRLEEQKPDRVKPFMTGATEQIKHILANFNNYQFFIGENM | |
Retrocopy | DIVINHHLQETSFTKESYKKYIKDYMKSIKGRLEEQKPDRVKPFMTGATEQIKHILANFNNYQFFIGENM |
Parental | NPDGMVALLDFREDGVTPYMIFFKDGLEMEKC |
NPDGMVALLDFREDGVTPYMIFFKDGLEMEKC | |
Retrocopy | NPDGMVALLDFREDGVTPYMIFFKDGLEMEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 8 .11 RPM | 0 .00 RPM |
SRP007412_cerebellum | 14 .36 RPM | 0 .00 RPM |
SRP007412_heart | 20 .13 RPM | 0 .00 RPM |
SRP007412_kidney | 14 .49 RPM | 0 .00 RPM |
SRP007412_liver | 53 .37 RPM | 0 .00 RPM |
SRP007412_testis | 14 .54 RPM | 0 .00 RPM |