RetrogeneDB ID: | retro_dnov_1349 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_184995:3673..4181(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSDNOG00000000653 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 82.56 % |
Parental protein coverage: | 98.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGSIDDSLIGGNASAEGPEGEGTESTVITGV |
M..YRDLISHDEM..DIYKIREIADGLCLEVEGKMVS.TEGSIDDSL.GGNASAEGP........VI.GV | |
Retrocopy | MTLYRDLISHDEMICDIYKIREIADGLCLEVEGKMVSGTEGSIDDSLTGGNASAEGPRAK-VPKAVIAGV |
Parental | DIVMNHH-QEPFTKEAYKKYIKDYMKSIKGKLEEQRPERVKSFMTGAAEQIKHILANFNNYQFFIGEN-M |
DIVMNHH.QE.....AY.KYIKDYMKSIKGKLEEQRPERVKSFMTGAAE.IKHILANFNN.QFF.GEN.. | |
Retrocopy | DIVMNHHLQETSSTKAY-KYIKDYMKSIKGKLEEQRPERVKSFMTGAAEKIKHILANFNNCQFFTGEN>L |
Parental | NPDGMVALLDYREDGVTPYMIFFKDGLEMEKC |
N.DGMVALLD.REDGVTPYMIFFKDG.EMEKC | |
Retrocopy | NLDGMVALLDCREDGVTPYMIFFKDGVEMEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 181 .44 RPM |
SRP012922_cerebellum | 0 .00 RPM | 63 .51 RPM |
SRP012922_heart | 0 .00 RPM | 91 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 265 .86 RPM |
SRP012922_liver | 0 .00 RPM | 112 .23 RPM |
SRP012922_lung | 0 .15 RPM | 210 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 308 .78 RPM |
SRP012922_spleen | 0 .00 RPM | 310 .30 RPM |