Parental gene:

RPLP1, ENSOGAG00000029641

Aliases:None
Description:ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873530.1:21876616..21879513(+)


>ENSOGAG00000029641
ATGGCCTCCGTCTCAGAGCTCGCCTGCATTTACTCAGCCCTCATTTTGCATGACGATGAGGTGACCGTCACGGAGGATAA
GATAAATGCCCTCATTAAAGCTGCTGGTGTAAATGTTGAACCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAATG
TCAACATTGGTAGCCTCATCTGCAACGTAGGGGCTGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCT
GCCCCCTCCACTGCTGCTGCCCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCTGAGGAATCTGATGATGA
CATGGGCTTTGGTCTTTTTGACTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018320 ortholog_one2one 4 retrogenes
retro_btau_1131, retro_btau_1717, retro_btau_186, retro_btau_615,
Callithrix jacchus ENSCJAG00000032919 ortholog_one2one 19 retrogenes
retro_cjac_1125, retro_cjac_1150, retro_cjac_1222, retro_cjac_1375, retro_cjac_1413, retro_cjac_1666, retro_cjac_1809, retro_cjac_183, retro_cjac_2090, retro_cjac_2626, retro_cjac_267, retro_cjac_2765, retro_cjac_306, retro_cjac_3131, retro_cjac_458, retro_cjac_469, retro_cjac_694, retro_cjac_750, retro_cjac_984,
Equus caballus ENSECAG00000008542 possible_ortholog 4 retrogenes
retro_ecab_380, retro_ecab_677, retro_ecab_820, retro_ecab_958,
Homo sapiens ENSG00000137818 ortholog_one2one 18 retrogenes
retro_hsap_1325, retro_hsap_1366, retro_hsap_1719, retro_hsap_1835, retro_hsap_2014, retro_hsap_2079, retro_hsap_2348, retro_hsap_2897, retro_hsap_2936, retro_hsap_3169, retro_hsap_3382, retro_hsap_3392, retro_hsap_3523, retro_hsap_3768, retro_hsap_3939, retro_hsap_472, retro_hsap_533, retro_hsap_679,
Gorilla gorilla ENSGGOG00000003980 ortholog_one2many 13 retrogenes
retro_ggor_1033, retro_ggor_118, retro_ggor_1276, retro_ggor_1458, retro_ggor_1628, retro_ggor_2036, retro_ggor_2163, retro_ggor_2269, retro_ggor_2381, retro_ggor_2534, retro_ggor_585, retro_ggor_73, retro_ggor_94,
Latimeria chalumnae ENSLACG00000012630 ortholog_one2many 1 retrogene
retro_lcha_7,
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Myotis lucifugus ENSMLUG00000010542 possible_ortholog 33 retrogenes
retro_mluc_10, retro_mluc_1064, retro_mluc_1122, retro_mluc_1234, retro_mluc_136, retro_mluc_1374, retro_mluc_1412, retro_mluc_1424, retro_mluc_1654, retro_mluc_1670, retro_mluc_1751, retro_mluc_1810, retro_mluc_1832, retro_mluc_1850, retro_mluc_1944, retro_mluc_197, retro_mluc_2025, retro_mluc_2255, retro_mluc_2265, retro_mluc_2294, retro_mluc_2489, retro_mluc_2578, retro_mluc_433, retro_mluc_472, retro_mluc_570, retro_mluc_577, retro_mluc_61, retro_mluc_732, retro_mluc_791, retro_mluc_858, retro_mluc_916, retro_mluc_945, retro_mluc_95,
Macaca mulatta ENSMMUG00000014888 ortholog_one2many 7 retrogenes
retro_mmul_111, retro_mmul_2194, retro_mmul_2282, retro_mmul_257, retro_mmul_260, retro_mmul_461, retro_mmul_60,
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
retro_mdom_1022,
Mustela putorius furo ENSMPUG00000000204 ortholog_one2one 13 retrogenes
retro_mputfur_1018, retro_mputfur_113, retro_mputfur_122, retro_mputfur_1265, retro_mputfur_129, retro_mputfur_1334, retro_mputfur_1450, retro_mputfur_1598, retro_mputfur_1613, retro_mputfur_304, retro_mputfur_628, retro_mputfur_635, retro_mputfur_709,
Mus musculus ENSMUSG00000007892 possible_ortholog 6 retrogenes
retro_mmus_180, retro_mmus_206, retro_mmus_2060, retro_mmus_2180, retro_mmus_247, retro_mmus_2525,
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Procavia capensis ENSPCAG00000014595 ortholog_one2one 7 retrogenes
retro_pcap_107, retro_pcap_118, retro_pcap_124, retro_pcap_315, retro_pcap_32, retro_pcap_36, retro_pcap_83,
Pongo abelii ENSPPYG00000006601 ortholog_one2one 5 retrogenes
retro_pabe_1506, retro_pabe_160, retro_pabe_182, retro_pabe_261, retro_pabe_3080,
Pan troglodytes ENSPTRG00000007228 ortholog_one2many 1 retrogene
retro_ptro_96,
Rattus norvegicus ENSRNOG00000011955 possible_ortholog 6 retrogenes
retro_rnor_1042, retro_rnor_1402, retro_rnor_1827, retro_rnor_2175, retro_rnor_2678, retro_rnor_493,
Rattus norvegicus ENSRNOG00000013874 possible_ortholog 3 retrogenes
retro_rnor_2432, retro_rnor_2700, retro_rnor_2934,
Ictidomys tridecemlineatus ENSSTOG00000027893 ortholog_one2one 8 retrogenes
retro_itri_1589, retro_itri_1698, retro_itri_1842, retro_itri_1856, retro_itri_226, retro_itri_409, retro_itri_796, retro_itri_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ogar_363 93.40 92.11
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2. retro_ogar_474 50.43 97.37
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3. retro_ogar_500 58.26 100.00
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4. retro_ogar_574 69.91 99.12
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5. retro_ogar_607 62.77 79.82
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6. retro_ogar_961 75.86 75.44
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7. retro_ogar_1078 58.06 53.51
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8. retro_ogar_1259 72.58 54.39
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9. retro_ogar_1363 83.33 100.00
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10. retro_ogar_1430 70.00 59.65
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11. retro_ogar_1670 66.67 78.07
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12. retro_ogar_2215 70.65 79.82
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13. retro_ogar_2413 69.49 100.00
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14. retro_ogar_2603 65.25 100.00
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15. retro_ogar_2683 92.98 100.00
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16. retro_ogar_2942 81.74 99.12
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17. retro_ogar_3053 69.88 72.81
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18. retro_ogar_3222 81.25 69.30
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19. retro_ogar_3393 82.61 100.00
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Download FASTA sequences of all ENSOGAG00000029641 retrocopies