RetrogeneDB ID: | retro_itri_226 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393280.1:6007973..6008212(-) | ||
Located in intron of: | ENSSTOG00000001807 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSTOG00000027893 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 72.29 % |
Parental protein coverage: | 70.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ACIYSALILHDDEVTVTED-KINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV-GAGGPAPAAGAA |
AC.YSALILH..EVTV.ED....ALIKAA..NVEPF..GLFAK.LANVNI.SL.CN..GAG.PAPAAGAA | |
Retrocopy | ACFYSALILHSNEVTVMED<SLKALIKAAAINVEPFQLGLFAKTLANVNIRSLVCNA>GAGRPAPAAGAA |
Parental | PAGGPA-PSTAAA |
..GGPA.PS..AA | |
Retrocopy | ATGGPA<PSAGAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |