RetrogeneDB ID: | retro_rnor_2678 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:40823071..40823344(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSRNOG00000011955 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P19944] |
Percent Identity: | 58.24 % |
Parental protein coverage: | 79.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAA |
SV...AC......L......V.EDKINALIKAAGVN.E.FWPGLFAKAL..VNIGSLI..VGAGGPAP.. | |
Retrocopy | SVHPRACLHLLCPLPATR*QVMEDKINALIKAAGVNGEAFWPGLFAKALTSVNIGSLIGSVGAGGPAPFP |
Parental | GAAPAGGPAPSAAAAPAEEKK |
.AAP.G.....A.....EE.. | |
Retrocopy | AAAPTGQKKVEAKKEESEESE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 0 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .91 RPM |
SRP017611_liver | 0 .00 RPM | 0 .47 RPM |