RetrogeneDB ID: | retro_ggor_585 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:71307785..71308111(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSGGOG00000003980 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.91 % |
Parental protein coverage: | 95.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGG-PAPAAGA |
...CIY.ALIL...EVT..EDK.N.LIKAA.V.VEPFWP..FAKALA.VNIGSL.CN.G.G...APAA.. | |
Retrocopy | KIVCIYWALILQSNEVTIMEDKFNTLIKAAAVTVEPFWPSFFAKALASVNIGSLLCNAGVGR<MAPAALT |
Parental | APAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD |
A.AGGPA.ST.AA.AEE..VEAKKEESEE.D.DMGFGLFD | |
Retrocopy | AQAGGPATSTTAASAEEREVEAKKEESEEPDEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 66 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 80 .18 RPM |
SRP007412_heart | 0 .00 RPM | 158 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 154 .31 RPM |
SRP007412_liver | 0 .00 RPM | 293 .98 RPM |
SRP007412_testis | 0 .00 RPM | 83 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_679 |
Callithrix jacchus | retro_cjac_984 |