Parental gene:

PTP4A1, ENSPCAG00000001271

Aliases:None
Description:protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]
Organism:Hyrax (Procavia capensis)
Coordinates:GeneScaffold_1965:10361..15381(+)


>ENSPCAG00000001271
ATGGCTGTGAACTGCCCAGCTCCTGCAGCAGTCCAATGTAACAGCACGCGATTTCTTACTAACCACTATTCAACCAACAT
GAACTTAAACAAATTCATAGAACTTAAGAAATACGGAGTTACCACAATAGTAAGAGTATGTGAGGCAACTTACGACACTG
CTCTTGTGGAAAAAGAAGGCATCCATGTTCTTGATTGGCCTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGAT
GACTGGTTAAGTCTTGTAAAAATTAAGTTTCGTGAAGAACCTGGTTGTTGTATTGCTGTTCATTGTGTTGCAGGTCTTGG
GAGAGCTCCAGTGCTTGTTGCCCTAGCATTAATAGAAGGTGGAATGAAATACGAAGATGCAGTACAGTTCATAAGACAAA
AGCGGCGAGGAGCTTTTAACAGCAAGCAACTTTTGTATTTGGAGAAGTATCGTCCTAAGATGCGGCTGCGCTTCAAAGAG
TCCAATGGTCATAGAAACAACTGTTGCATTCAATAA

Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000018507 possible_ortholog 4 retrogenes
retro_dnov_1850, retro_dnov_278, retro_dnov_692, retro_dnov_996,
Echinops telfairi ENSETEG00000008183 possible_ortholog 6 retrogenes
retro_etel_1485, retro_etel_1681, retro_etel_1698, retro_etel_18, retro_etel_2153, retro_etel_668,
Latimeria chalumnae ENSLACG00000007183 ortholog_one2one 1 retrogene
retro_lcha_90,
Myotis lucifugus ENSMLUG00000001162 possible_ortholog 1 retrogene
retro_mluc_264,
Macaca mulatta ENSMMUG00000002777 possible_ortholog 1 retrogene
retro_mmul_1720,
Monodelphis domestica ENSMODG00000018701 ortholog_one2one 5 retrogenes
retro_mdom_1630, retro_mdom_1864, retro_mdom_363, retro_mdom_729, retro_mdom_927,
Oryctolagus cuniculus ENSOCUG00000006311 possible_ortholog 4 retrogenes
retro_ocun_225, retro_ocun_226, retro_ocun_24, retro_ocun_26,
Rattus norvegicus ENSRNOG00000011771 possible_ortholog 4 retrogenes
retro_rnor_1591, retro_rnor_2798, retro_rnor_494, retro_rnor_827,
Rattus norvegicus ENSRNOG00000046370 possible_ortholog 4 retrogenes
retro_rnor_2349, retro_rnor_2868, retro_rnor_612, retro_rnor_971,
Tupaia belangeri ENSTBEG00000009956 possible_ortholog 14 retrogenes
retro_tbel_1216, retro_tbel_1392, retro_tbel_2167, retro_tbel_2236, retro_tbel_23, retro_tbel_2549, retro_tbel_2570, retro_tbel_2611, retro_tbel_3144, retro_tbel_3295, retro_tbel_3424, retro_tbel_4074, retro_tbel_4123, retro_tbel_869,
Tursiops truncatus ENSTTRG00000004129 possible_ortholog 6 retrogenes
retro_ttru_34, retro_ttru_450, retro_ttru_571, retro_ttru_642, retro_ttru_643, retro_ttru_69,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pcap_76 56.00 56.73
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2. retro_pcap_183 56.73 98.25
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3. retro_pcap_249 69.77 98.83
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4. retro_pcap_291 60.63 72.51
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5. retro_pcap_338 67.47 95.91
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6. retro_pcap_367 70.77 74.27
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7. retro_pcap_425 69.57 52.05
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8. retro_pcap_431 74.44 52.05
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Download FASTA sequences of all ENSPCAG00000001271 retrocopies