RetrogeneDB ID: | retro_rnor_2798 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:45769450..45769933(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSRNOG00000011771 | ||
Aliases: | None | ||
Description: | Protein tyrosine phosphatase type IVA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q78EG7] |
Percent Identity: | 74.53 % |
Parental protein coverage: | 93.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDG |
.N.P.........MR.LIT.NPTNATLNK.IEE.K.Y..T.I.R.CEATY.T.LV.KEGI.VLDWPFDDG | |
Retrocopy | LNEPPCSCRSHIHMRVLITYNPTNATLNKCIEEVKNYATTPIGRICEATYNTALVQKEGIRVLDWPFDDG |
Parental | APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNS |
A.P.NQIVDDWLSLVKIKF.EEPGC.IAVHCVAG.GRA..LVALALIEGGMKYE..VQFIRQ....AFNS | |
Retrocopy | ASPYNQIVDDWLSLVKIKFHEEPGCSIAVHCVAGFGRALGLVALALIEGGMKYECIVQFIRQ*QHRAFNS |
Parental | KQLLYLEKYRPKMRLRFKDSN |
KQLLYLEK..PKMRL.FKDSN | |
Retrocopy | KQLLYLEKCHPKMRLCFKDSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .81 RPM |
SRP017611_liver | 0 .00 RPM | 0 .94 RPM |