RetrogeneDB ID: | retro_ocun_226 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:87772407..87772929(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025000 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSOCUG00000006311 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 98.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF | |
Retrocopy | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKR.GA | |
Retrocopy | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRHGA |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
FNSKQLLYLEKY.PKM.LRFKDSNGHRNNCCIQ | |
Retrocopy | FNSKQLLYLEKYCPKMWLRFKDSNGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .88 RPM | 7 .12 RPM |
SRP017611_kidney | 1 .32 RPM | 8 .62 RPM |
SRP017611_liver | 1 .23 RPM | 6 .63 RPM |