RetrogeneDB ID: | retro_ttru_450 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_233:227760..228274(+) | ||
Located in intron of: | ENSTTRG00000006349 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSTTRG00000004129 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 87.28 % |
Parental protein coverage: | 99.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARMNRPAPVEITYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEATYDTSLVEKEGIHVLDWPF |
M..MNRPAPVEITY.NMRFL.THNPTNATLNKFIEELKKYGV.T.VRVCEATYDT.LVEKEGIHVLDWPF | |
Retrocopy | MDQMNRPAPVEITYENMRFLMTHNPTNATLNKFIEELKKYGVITIVRVCEATYDTTLVEKEGIHVLDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREDPGCC-IAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRG |
DDGAPPSNQIVDDWLSLVKIKF.EDPGCC.IAVHCVAGLGR.P...ALALIEGG.KYEDA.QFIRQKR.G | |
Retrocopy | DDGAPPSNQIVDDWLSLVKIKFCEDPGCC>IAVHCVAGLGRPPAFIALALIEGGIKYEDALQFIRQKRHG |
Parental | AFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCI |
AFNSK.LLYLEKY.PKMRL...DSNGHRN.CCI | |
Retrocopy | AFNSK-LLYLEKYCPKMRLHSEDSNGHRNSCCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |