RetrogeneDB ID: | retro_rnor_2868 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:124233554..124234073(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000030645 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1566035 | ||
Ensembl ID: | ENSRNOG00000046370 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MARMN.PAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVC.AT.DTTLVEKE.IHVL.W.F | |
Retrocopy | MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DDGAPPSNQIVDDWLSLVKIKF.EEPGC.IAV.CVAGLGRAP.LVALALIEGGM.YEDAVQFIRQKRRGA | |
Retrocopy | DDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGA |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
FN..Q.L.LEKY.PKM.LRFKDSN.HRNNCCIQ | |
Retrocopy | FNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |