RetrogeneDB ID: | retro_mmul_1720 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:126103657..126103918(-) | ||
Located in intron of: | ENSMMUG00000007470 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000002777 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.63 % |
Parental protein coverage: | 67.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | IVRVCEATYDTTLV-EKEGIHVLDWPFDDGAPPSNQI-VDDWLSLVK-IKFREEPGCCIAVHCVAGLGRA |
IV..CEATY.T.LV.EKEGI.VL.....DG..P..Q..VD.WL..VK.IKF..E..CCI...C....G.. | |
Retrocopy | IVIICEATYNTALV<EKEGIQVLN----DGTLPFIQA>VDNWLCFVK<IKFLGEASCCIKYYCHHAAGFG |
Parental | PVLV-ALALIEGGMKYEDAVQFIRQ |
..LV..L......MKYEDAV.FIRQ | |
Retrocopy | RALV>SLSQH*SEMKYEDAVKFIRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .26 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .20 RPM |
SRP007412_cerebellum | 0 .00 RPM | 10 .01 RPM |
SRP007412_heart | 0 .00 RPM | 5 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .39 RPM |
SRP007412_liver | 0 .00 RPM | 36 .50 RPM |
SRP007412_testis | 0 .00 RPM | 105 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_593 |
Equus caballus | retro_ecab_783 |