Parental gene: | IMPDH1, ENSPPYG00000017976 |
| Aliases: | None |
| Description: | IMP (inosine 5'-monophosphate) dehydrogenase 1 [Source:HGNC Symbol;Acc:6052] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 7:125457675..125473251(-) |
>ENSPPYG00000017976
ATGGAGGGGCCACTCAGTCCACCACCGCTGCAGGGAGGCGGAGCCGCCGCTGCTCCGGAGCCCGGAGCCCGGCAACACCC
GGGACACGAGACGGCGGCGCAGCGGTACAGCGCCCGACTGCTGCAGGCCGGCTACGAGCCCGAGAGCCCTAGATTGGACC
TCGCTACACACGCGACGACACCCCGTTCAGAACTATCTTCAGTGGTCTTACTGGCAGGTGTTGGTGTCCAGATGGATCGC
CTTCGCAGGGCTAGCATGGCGGACTACCTGATCAGCGGCGGCACCGGCTACGTGCCCGAGGACGGGCTCACCGAACAAAA
AAACTTCGCCAGCGCCGACGGCCTCACCTACAACGACTTCCTGATTCTCCCAGGATTCATAGACTTCATAGCTGATGAGG
TGGACCTGACCTCAGCCCTGACCCGGAAGATCACGCTGAAGACACCGCTGATCTCCTCCCCCATGGACACTGTGACAGAG
GCTGACATGGCCATTGCCATGGCTCTGATGGGAGGTATTGGTTTCATTCACCACAACTGCACCCCAGAGTTCCAGGCCAA
CGAGGTGCGGAAGGTCAAGAAGTTTGAACAGGGCTTCATCACGGACCCCGTGGTGCTGAGCCCCTCGCACACTGTGGGCG
ATGTGCTGGAGGCCAAGATGCGGCATGGCTTCTCTGGCATCCCCATCACTGAGACGGGCACCATGGGCAGCAAGCTGGTG
GGCATCGTCACCTCCCGAGACATCGACTTTCTTGCTGAGAAGGACCACACCACCCTCCTCAGTGAGGTGATGACGCCAAG
GATTGAACTGGTGGTGGCTCCAGCAGGTGTGACGTTGAAAGAGGCAAATGAGATCCTGCAGCGTAGCAAGAAAGGGAAGC
TGCCTATCGTCAATGATCGCGATGAGCTGGTGGCCATCATCGCCCGCACCGACCTGAAGAAGAACCGAGACTACCCTCTG
GCCTCCAAGGATTCCCAGAAGCAGCTGCTCTGCGGGGCAGCTGTGGGCACCCGTGAGGATGACAAATACCGTCTGGACCT
GCTCACCCAGGCGGGTGTCGACGTCATTGTCTTGGACTCGTCCCAAGGGAATTCGGTGTATCAGATCGCCATGGTGCATT
ACATCAAACAGAAGTACCCCCACCTCCAGGTGATTGGGGGGAACGTGGTGACAGCAGCCCAGGCCAAGAACCTGATTGAT
GCTGGTGTGGACGGGCTGCGCGTGGGCATGGGCTGTGGCTCCATCTGCATCACCCAGGAAGTGATGGCCTGTGGTCGGCC
CCAGGGCACTGCTGTGTACAAGGTGGCTGAGTATGCCCGGCGCTTTGGTGTGCCCATCATAGCCGATGGCGGCATCCAGA
CCGTGGGCCACGTGGTCAAGGCCCTGGCCCTTGGAGCCTCCACAGTGATGATGGGTTCCCTGCTGGCCGCCACTACGGAG
GCCCCTGGCGAGTACTTCTTCTCAGACGGGGTGCGGCTCAAGAAGTACCGGGGCATGGGCTCACTGGATGCCATGGAGAA
GAGCAGCAGCAGCCAGAAACGATACTTCAGTGAGGGGGATAAAGTGAAGATCGCGCAGGGTGTCTCGGGCTCCATCCAGG
ACAAAGGATCCATTCAGAAGTTCGTGCCCTACCTCATAGCGGGCATCCAACACGGCTGCCAGGATATAGGGGCCCGCAGC
CTGTCTGTCCTTCGGTCCATGATGTACTCAGGAGAGCTCAAGTTTGAGAAGCGGACCATGTCGGCCCAGATCGAGGGTGG
CGTCCATGGCCTGCAC
ATGGAGGGGCCACTCAGTCCACCACCGCTGCAGGGAGGCGGAGCCGCCGCTGCTCCGGAGCCCGGAGCCCGGCAACACCC
GGGACACGAGACGGCGGCGCAGCGGTACAGCGCCCGACTGCTGCAGGCCGGCTACGAGCCCGAGAGCCCTAGATTGGACC
TCGCTACACACGCGACGACACCCCGTTCAGAACTATCTTCAGTGGTCTTACTGGCAGGTGTTGGTGTCCAGATGGATCGC
CTTCGCAGGGCTAGCATGGCGGACTACCTGATCAGCGGCGGCACCGGCTACGTGCCCGAGGACGGGCTCACCGAACAAAA
AAACTTCGCCAGCGCCGACGGCCTCACCTACAACGACTTCCTGATTCTCCCAGGATTCATAGACTTCATAGCTGATGAGG
TGGACCTGACCTCAGCCCTGACCCGGAAGATCACGCTGAAGACACCGCTGATCTCCTCCCCCATGGACACTGTGACAGAG
GCTGACATGGCCATTGCCATGGCTCTGATGGGAGGTATTGGTTTCATTCACCACAACTGCACCCCAGAGTTCCAGGCCAA
CGAGGTGCGGAAGGTCAAGAAGTTTGAACAGGGCTTCATCACGGACCCCGTGGTGCTGAGCCCCTCGCACACTGTGGGCG
ATGTGCTGGAGGCCAAGATGCGGCATGGCTTCTCTGGCATCCCCATCACTGAGACGGGCACCATGGGCAGCAAGCTGGTG
GGCATCGTCACCTCCCGAGACATCGACTTTCTTGCTGAGAAGGACCACACCACCCTCCTCAGTGAGGTGATGACGCCAAG
GATTGAACTGGTGGTGGCTCCAGCAGGTGTGACGTTGAAAGAGGCAAATGAGATCCTGCAGCGTAGCAAGAAAGGGAAGC
TGCCTATCGTCAATGATCGCGATGAGCTGGTGGCCATCATCGCCCGCACCGACCTGAAGAAGAACCGAGACTACCCTCTG
GCCTCCAAGGATTCCCAGAAGCAGCTGCTCTGCGGGGCAGCTGTGGGCACCCGTGAGGATGACAAATACCGTCTGGACCT
GCTCACCCAGGCGGGTGTCGACGTCATTGTCTTGGACTCGTCCCAAGGGAATTCGGTGTATCAGATCGCCATGGTGCATT
ACATCAAACAGAAGTACCCCCACCTCCAGGTGATTGGGGGGAACGTGGTGACAGCAGCCCAGGCCAAGAACCTGATTGAT
GCTGGTGTGGACGGGCTGCGCGTGGGCATGGGCTGTGGCTCCATCTGCATCACCCAGGAAGTGATGGCCTGTGGTCGGCC
CCAGGGCACTGCTGTGTACAAGGTGGCTGAGTATGCCCGGCGCTTTGGTGTGCCCATCATAGCCGATGGCGGCATCCAGA
CCGTGGGCCACGTGGTCAAGGCCCTGGCCCTTGGAGCCTCCACAGTGATGATGGGTTCCCTGCTGGCCGCCACTACGGAG
GCCCCTGGCGAGTACTTCTTCTCAGACGGGGTGCGGCTCAAGAAGTACCGGGGCATGGGCTCACTGGATGCCATGGAGAA
GAGCAGCAGCAGCCAGAAACGATACTTCAGTGAGGGGGATAAAGTGAAGATCGCGCAGGGTGTCTCGGGCTCCATCCAGG
ACAAAGGATCCATTCAGAAGTTCGTGCCCTACCTCATAGCGGGCATCCAACACGGCTGCCAGGATATAGGGGCCCGCAGC
CTGTCTGTCCTTCGGTCCATGATGTACTCAGGAGAGCTCAAGTTTGAGAAGCGGACCATGTCGGCCCAGATCGAGGGTGG
CGTCCATGGCCTGCAC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 16 .92 RPM |
| SRP007412_cerebellum | 9 .12 RPM |
| SRP007412_heart | 3 .31 RPM |
| SRP007412_kidney | 8 .88 RPM |
| SRP007412_liver | 5 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000017770 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106348 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003963 | ortholog_one2one | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000016082 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000014509 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012341 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013884 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019660 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2133 | 84.24 | 68.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2138 | 86.99 | 82.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2346 | 85.67 | 53.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3102 | 85.05 | 86.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3292 | 86.94 | 56.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_3392 | 88.19 | 85.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_3736 | 90.55 | 85.81 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000017976 retrocopies