RetrogeneDB ID: | retro_hsap_4247 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:34133157..34134703(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000239392 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMPDH1 | ||
Ensembl ID: | ENSG00000106348 | ||
Aliases: | IMPDH1, IMPD, IMPD1, LCA11, RP10, sWSS2608 | ||
Description: | IMP (inosine 5'-monophosphate) dehydrogenase 1 [Source:HGNC Symbol;Acc:6052] |
Percent Identity: | 88.8 % |
Parental protein coverage: | 91.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PESMADYLISGGTGYVPEDGLTAQQLFASADGLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLIS |
P.S..DYLISGGTGY.PEDGL.AQQLFASA.GLT...FLILPG.IDFIA.EVDLTSALTRKITLKTPLIS | |
Retrocopy | PSSVVDYLISGGTGYMPEDGLIAQQLFASA*GLT*DAFLILPGLIDFIA-EVDLTSALTRKITLKTPLIS |
Parental | SPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKKFEQGFITDPVVLSPSHTVGDVLEAKMRH |
SPMDTVTEAD.AIAMALMG..GFIHHNCTPE.QA.E.RKVKKFEQGFITDP.VLSPSHTVGDVLEAKMRH | |
Retrocopy | SPMDTVTEADVAIAMALMGDTGFIHHNCTPELQAKELRKVKKFEQGFITDPTVLSPSHTVGDVLEAKMRH |
Parental | GFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKG |
GFSGIPITETGTMGSKLVGIVTSRDI.FLAEKDHTTLLSEVMTPR.ELVVAPA.VTLKEANEILQRSKKG | |
Retrocopy | GFSGIPITETGTMGSKLVGIVTSRDINFLAEKDHTTLLSEVMTPRLELVVAPACVTLKEANEILQRSKKG |
Parental | KLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQ-KQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSS |
KLPI.ND..ELVAII...DLKKN.DYPLASKDSQ.KQLLCGAAVGTREDDKYRLDLLTQ.GVD.IVLDSS | |
Retrocopy | KLPIINDRNELVAIITGSDLKKNQDYPLASKDSQ>KQLLCGAAVGTREDDKYRLDLLTQVGVDIIVLDSS |
Parental | QGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTA |
QGN.VYQIAMVHYIKQKYPHLQVIG.NVVTAAQAKNLIDAGVDGL.VGMGCGSIC.T.EVMACG.PQGTA | |
Retrocopy | QGNLVYQIAMVHYIKQKYPHLQVIGRNVVTAAQAKNLIDAGVDGLCVGMGCGSICVTREVMACGQPQGTA |
Parental | VYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGS |
VYK.A.YARRFGVPIIA.G.IQT.GH.VKALALG.STVMMGSLLA.T.EAPGEY.FSD.VRLKKY.GMGS | |
Retrocopy | VYKEAKYARRFGVPIIANGSIQTMGHIVKALALGVSTVMMGSLLAITMEAPGEY-FSDEVRLKKYWGMGS |
Parental | LDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSG |
LDAMEKSSSSQKRYFS.GDKVKI.QGV.GSIQDKGSIQKFVPYLI.GIQHGC.DIGA.SLSV.RSMMYSG | |
Retrocopy | LDAMEKSSSSQKRYFSKGDKVKIVQGVLGSIQDKGSIQKFVPYLIVGIQHGC*DIGAHSLSVPRSMMYSG |
Parental | ELKFEKRTMSAQIEGGVHGLHSYEKRLY |
ELKFEKR.MSAQIEGGVHGLH.YEKRLY | |
Retrocopy | ELKFEKRIMSAQIEGGVHGLHFYEKRLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 54 .51 RPM |
bodymap2_adrenal | 0 .00 RPM | 33 .80 RPM |
bodymap2_brain | 0 .00 RPM | 6 .45 RPM |
bodymap2_breast | 0 .00 RPM | 24 .55 RPM |
bodymap2_colon | 0 .00 RPM | 23 .28 RPM |
bodymap2_heart | 0 .00 RPM | 11 .10 RPM |
bodymap2_kidney | 0 .00 RPM | 12 .92 RPM |
bodymap2_liver | 0 .00 RPM | 2 .60 RPM |
bodymap2_lung | 0 .00 RPM | 18 .14 RPM |
bodymap2_lymph_node | 0 .00 RPM | 42 .47 RPM |
bodymap2_ovary | 0 .04 RPM | 24 .71 RPM |
bodymap2_prostate | 0 .00 RPM | 22 .01 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .29 RPM |
bodymap2_testis | 0 .06 RPM | 17 .72 RPM |
bodymap2_thyroid | 0 .00 RPM | 8 .32 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 90 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2886 |
Pongo abelii | retro_pabe_3392 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017770 | 1 retrocopy | |
Homo sapiens | ENSG00000106348 | 7 retrocopies |
retro_hsap_2360, retro_hsap_2368, retro_hsap_2608, retro_hsap_3797, retro_hsap_4005, retro_hsap_4247 , retro_hsap_4808,
|
Homo sapiens | ENSG00000178035 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003963 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000016082 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014509 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012341 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017976 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000019660 | 7 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |