RetrogeneDB ID: | retro_hsap_2368 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:202002798..202003719(-) | ||
Located in intron of: | ENSG00000003402 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232133 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMPDH1 | ||
Ensembl ID: | ENSG00000106348 | ||
Aliases: | IMPDH1, IMPD, IMPD1, LCA11, RP10, sWSS2608 | ||
Description: | IMP (inosine 5'-monophosphate) dehydrogenase 1 [Source:HGNC Symbol;Acc:6052] |
Percent Identity: | 86.54 % |
Parental protein coverage: | 52.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QQLFASADGLTYNDFLILPGFIDFIADEVDLTSALTR-KITLKTPLISSPMDTVTEADMAIAMALMGGIG |
QQLFAS..GLTYNDFLILPGFIDFIADEVDLTSALT....TLKTPLISSPMDTVTEAD.AI.MALMGG.G | |
Retrocopy | QQLFASDQGLTYNDFLILPGFIDFIADEVDLTSALTQ<MVTLKTPLISSPMDTVTEADLAIVMALMGGTG |
Parental | FIHHNCTPEFQANEVRKVKKFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVT |
FIHHNCTPEFQA.EV.KVKKFE.GFIT.PVVLSP.HTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVT | |
Retrocopy | FIHHNCTPEFQASEVQKVKKFEPGFITHPVVLSPLHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVT |
Parental | SRDIDFLAEKDHTTLLSEVMTPRIELVVAPA-GVTLKEANEILQRSKKG-KLPIVNDCDELVAIIARTDL |
SRDIDFLAEKDHTTLLSEVM.PRI.LVVAPA..V.LKEANEILQ.SKKG.KLPIVND.DELVAII..T.L | |
Retrocopy | SRDIDFLAEKDHTTLLSEVMMPRIKLVVAPA<SVRLKEANEILQLSKKG<KLPIVNDRDELVAIITCTAL |
Parental | KKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHL |
.KNRDYP.ASKDS..QLL.GAAVGT.EDDKY.LDLLTQ.GV.VI.LDSSQGNSVYQIAMVHYIKQK.PHL | |
Retrocopy | -KNRDYPVASKDSHEQLLGGAAVGTHEDDKYHLDLLTQVGVNVIGLDSSQGNSVYQIAMVHYIKQK*PHL |
Parental | QVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGS |
QVIGGNVVTAAQA.NLIDAGVDGL..GM.C.. | |
Retrocopy | QVIGGNVVTAAQANNLIDAGVDGLGRGMDCAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 4 .00 RPM | 54 .51 RPM |
bodymap2_adrenal | 9 .78 RPM | 33 .80 RPM |
bodymap2_brain | 0 .73 RPM | 6 .45 RPM |
bodymap2_breast | 5 .08 RPM | 24 .55 RPM |
bodymap2_colon | 2 .03 RPM | 23 .28 RPM |
bodymap2_heart | 1 .99 RPM | 11 .10 RPM |
bodymap2_kidney | 2 .25 RPM | 12 .92 RPM |
bodymap2_liver | 1 .01 RPM | 2 .60 RPM |
bodymap2_lung | 12 .87 RPM | 18 .14 RPM |
bodymap2_lymph_node | 9 .65 RPM | 42 .47 RPM |
bodymap2_ovary | 0 .64 RPM | 24 .71 RPM |
bodymap2_prostate | 1 .30 RPM | 22 .01 RPM |
bodymap2_skeletal_muscle | 0 .69 RPM | 1 .29 RPM |
bodymap2_testis | 0 .92 RPM | 17 .72 RPM |
bodymap2_thyroid | 3 .77 RPM | 8 .32 RPM |
bodymap2_white_blood_cells | 7 .25 RPM | 90 .88 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BF081886 | 202002868 | 202003132 | 99.3 | 258 | 2 | 252 |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1798 |
Pongo abelii | retro_pabe_2138 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017770 | 1 retrocopy | |
Homo sapiens | ENSG00000106348 | 7 retrocopies |
retro_hsap_2360, retro_hsap_2368 , retro_hsap_2608, retro_hsap_3797, retro_hsap_4005, retro_hsap_4247, retro_hsap_4808,
|
Homo sapiens | ENSG00000178035 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003963 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000016082 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014509 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012341 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017976 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000019660 | 7 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 6 .40 RPM |
CEU_NA11843 | 4 .27 RPM |
CEU_NA11930 | 8 .31 RPM |
CEU_NA12004 | 7 .48 RPM |
CEU_NA12400 | 4 .77 RPM |
CEU_NA12751 | 16 .37 RPM |
CEU_NA12760 | 10 .60 RPM |
CEU_NA12827 | 5 .75 RPM |
CEU_NA12872 | 10 .10 RPM |
CEU_NA12873 | 9 .28 RPM |
FIN_HG00183 | 9 .01 RPM |
FIN_HG00277 | 8 .50 RPM |
FIN_HG00315 | 7 .89 RPM |
FIN_HG00321 | 7 .50 RPM |
FIN_HG00328 | 7 .27 RPM |
FIN_HG00338 | 6 .56 RPM |
FIN_HG00349 | 8 .62 RPM |
FIN_HG00375 | 8 .73 RPM |
FIN_HG00377 | 8 .55 RPM |
FIN_HG00378 | 12 .11 RPM |
GBR_HG00099 | 5 .55 RPM |
GBR_HG00111 | 4 .26 RPM |
GBR_HG00114 | 6 .73 RPM |
GBR_HG00119 | 9 .70 RPM |
GBR_HG00131 | 6 .21 RPM |
GBR_HG00133 | 8 .10 RPM |
GBR_HG00134 | 7 .08 RPM |
GBR_HG00137 | 8 .27 RPM |
GBR_HG00142 | 9 .28 RPM |
GBR_HG00143 | 5 .42 RPM |
TSI_NA20512 | 4 .61 RPM |
TSI_NA20513 | 4 .72 RPM |
TSI_NA20518 | 8 .24 RPM |
TSI_NA20532 | 11 .29 RPM |
TSI_NA20538 | 12 .12 RPM |
TSI_NA20756 | 6 .14 RPM |
TSI_NA20765 | 7 .46 RPM |
TSI_NA20771 | 10 .75 RPM |
TSI_NA20786 | 7 .40 RPM |
TSI_NA20798 | 5 .92 RPM |
YRI_NA18870 | 5 .82 RPM |
YRI_NA18907 | 7 .14 RPM |
YRI_NA18916 | 7 .43 RPM |
YRI_NA19093 | 10 .57 RPM |
YRI_NA19099 | 5 .75 RPM |
YRI_NA19114 | 5 .56 RPM |
YRI_NA19118 | 8 .10 RPM |
YRI_NA19213 | 9 .35 RPM |
YRI_NA19214 | 7 .97 RPM |
YRI_NA19223 | 5 .11 RPM |