RetrogeneDB ID: | retro_mmul_317 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:38102795..38104337(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000000710 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMPDH1 | ||
Ensembl ID: | ENSMMUG00000014509 | ||
Aliases: | None | ||
Description: | IMP (inosine 5'-monophosphate) dehydrogenase 1 [Source:HGNC Symbol;Acc:6052] |
Percent Identity: | 92.31 % |
Parental protein coverage: | 90.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANE |
DFLILPGFIDF...EVDLTSALTRKITLKTPLIS.P.DTVTEADMAIAMALMGGIGFIHHNCTPEFQAN. | |
Retrocopy | DFLILPGFIDFLTGEVDLTSALTRKITLKTPLISFPTDTVTEADMAIAMALMGGIGFIHHNCTPEFQANK |
Parental | VRKVKKFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTT |
V.KVKKFEQGFITDPVVLSPSHTVGDVLEAK.RHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTT | |
Retrocopy | VQKVKKFEQGFITDPVVLSPSHTVGDVLEAKVRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTT |
Parental | LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASKDSHKQ |
LLSEVMTPRIELVVAPAGVT..EANEIL.RSKKGKLP.VND.DELVAIIART.LKKNRDYPLASKDSHKQ | |
Retrocopy | LLSEVMTPRIELVVAPAGVTFEEANEILKRSKKGKLPVVNDHDELVAIIARTNLKKNRDYPLASKDSHKQ |
Parental | LLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNL |
LLCGA.VGTREDDK.RLDLLTQAGVDVIVLDSSQGN.VYQIAMVHY.KQKYPHLQVIGGNVVTAAQAKNL | |
Retrocopy | LLCGAVVGTREDDKFRLDLLTQAGVDVIVLDSSQGNLVYQIAMVHYTKQKYPHLQVIGGNVVTAAQAKNL |
Parental | IDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGAST |
IDAGVDGL.VGMGCGSICIT.EVMACGR..G.AVYKVAEYARRFGVPIIADGGIQT.GHVVKALALGAST | |
Retrocopy | IDAGVDGLHVGMGCGSICITPEVMACGRIHGSAVYKVAEYARRFGVPIIADGGIQTLGHVVKALALGAST |
Parental | VMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSI |
VMMGSLLAATTEA..EY.FSDGV.LKKY.GMGSLDAMEKSSSSQKRYFSEGDKVK.AQ..SGSI.DKG.I | |
Retrocopy | VMMGSLLAATTEASAEY-FSDGVPLKKYQGMGSLDAMEKSSSSQKRYFSEGDKVKFAQSISGSIRDKGFI |
Parental | QKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY |
QKFVPYLIAGIQH.CQDIGARSLSVLRSMMYSGELKFEKRT.SAQ.EGGVHGLHSYEKRLY | |
Retrocopy | QKFVPYLIAGIQHSCQDIGARSLSVLRSMMYSGELKFEKRTVSAQMEGGVHGLHSYEKRLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 10 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 26 .34 RPM |
SRP007412_cerebellum | 0 .19 RPM | 8 .85 RPM |
SRP007412_heart | 0 .00 RPM | 11 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .62 RPM |
SRP007412_liver | 0 .16 RPM | 16 .59 RPM |
SRP007412_testis | 2 .49 RPM | 9 .57 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4808 |
Pan troglodytes | retro_ptro_3198 |
Gorilla gorilla | retro_ggor_2993 |
Pongo abelii | retro_pabe_3736 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017770 | 1 retrocopy | |
Homo sapiens | ENSG00000106348 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003963 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000016082 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014509 | 2 retrocopies |
retro_mmul_1551, retro_mmul_317 ,
|
Nomascus leucogenys | ENSNLEG00000012341 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017976 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000019660 | 7 retrocopies |