Parental gene: | RPL3L, ENSPTRG00000007617 |
| Aliases: | None |
| Description: | ribosomal protein L3-like [Source:HGNC Symbol;Acc:10351] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 16:2001629..2011920(-) |
>ENSPTRG00000007617
ATGTCCCACCGGAAGTTTTCCGCCCCTCGGCACGGACACCTGGGCTTCCTGCCCCATAAGAGGAGCCACCGGCACCGGGG
GAAGGTGAAGACGTGGCCGCGGGATGACCCCAGCCAGCCCGTGCACCTCACGGCCTTCCTGGGCTACAAGGCAGGCATGA
CCCACACCCTGCGGGAGGTGCACCGGCCGGGGCTCAAAATTTCCAAACGGGAGGAGGTGGAGGCGGTGACAATTGTAGAA
ACGCCGCCCCTAATGGTGGTGGGCGTGGTGGGCTATGTGGCCACCCCTCGAGGTCTCCGGAGCTTCAAGACCATCTTTGC
AGAACACCTCAGTGACGAGTGCCGGCGCCGATTCTACAAGGACTGGCACAAGAGCAAGAAGAAAGCCTTCACCAAGGCCT
GCAAGAGGTGGCGGGACACAGACGGGAAAAAGCAGCTACAGAAGGACTTCGCCGCCATGAAGAAGTACTGCAAGGTCATT
CGGGTCATTGTCCACACTCAGATGAAACTGCTGCCCTTCCGGCAGAAGAAGGCCCACATCATGGAGATCCAGCTGAACGG
TGGCACGGTGGCCGAGAAGGTGGCCTGGGCCCAGGCCCGGCTGGAGAAGCAGGTGCCCGTGCACAGCGTGTTCAGCCAGA
GTGAGGTCATTGATGTCATTGCTGTCACCAAGGGTCGAGGCGTCAAAGGGGTCACAAGCCGCTGGCATACCAAGAAGCTG
CCGCGGAAGACCCATAAGGGCCTGCGCAAGGTGGCCTGCATTGGCGCCTGGCACCCTGCCCGCGTGGGCTGCTCCATTGC
TCGGGCCGGGCAGAAGGGCTATCACCACCGCACGGAGCTCAACAAGAAGATCTTCCGCATCGGCAGGGGCCCGCACATGG
AGGACGGGAAGCCGGTGAAGAACAATGCATCCACCAGCTACGACGTGACTGCCAAGTCCATCACACCGCTGGGTGGCTTC
CCCCACTATGGGGAAGTGAACAATGACTTCGTCATGCTGAAGGGTTGTATTGCTGGTACCAAGAAGCGGGTCATTACGCT
GAGAAAGTCCCTCCTGGTGCACCACAGTCGCCAAGCCGTGGAGAATATTGAGCTCAAGTTCATTGACACCACCTCCAAGT
TCGGCCATGGCCGCTTCCAGACAGCCCAAGAGAAGAGGGCCTTCATGGGCCCCCAAAAGAAGCATCTGGAGAAGGAAACG
CCGGAGACCTCGGGAGACTTGTAG
ATGTCCCACCGGAAGTTTTCCGCCCCTCGGCACGGACACCTGGGCTTCCTGCCCCATAAGAGGAGCCACCGGCACCGGGG
GAAGGTGAAGACGTGGCCGCGGGATGACCCCAGCCAGCCCGTGCACCTCACGGCCTTCCTGGGCTACAAGGCAGGCATGA
CCCACACCCTGCGGGAGGTGCACCGGCCGGGGCTCAAAATTTCCAAACGGGAGGAGGTGGAGGCGGTGACAATTGTAGAA
ACGCCGCCCCTAATGGTGGTGGGCGTGGTGGGCTATGTGGCCACCCCTCGAGGTCTCCGGAGCTTCAAGACCATCTTTGC
AGAACACCTCAGTGACGAGTGCCGGCGCCGATTCTACAAGGACTGGCACAAGAGCAAGAAGAAAGCCTTCACCAAGGCCT
GCAAGAGGTGGCGGGACACAGACGGGAAAAAGCAGCTACAGAAGGACTTCGCCGCCATGAAGAAGTACTGCAAGGTCATT
CGGGTCATTGTCCACACTCAGATGAAACTGCTGCCCTTCCGGCAGAAGAAGGCCCACATCATGGAGATCCAGCTGAACGG
TGGCACGGTGGCCGAGAAGGTGGCCTGGGCCCAGGCCCGGCTGGAGAAGCAGGTGCCCGTGCACAGCGTGTTCAGCCAGA
GTGAGGTCATTGATGTCATTGCTGTCACCAAGGGTCGAGGCGTCAAAGGGGTCACAAGCCGCTGGCATACCAAGAAGCTG
CCGCGGAAGACCCATAAGGGCCTGCGCAAGGTGGCCTGCATTGGCGCCTGGCACCCTGCCCGCGTGGGCTGCTCCATTGC
TCGGGCCGGGCAGAAGGGCTATCACCACCGCACGGAGCTCAACAAGAAGATCTTCCGCATCGGCAGGGGCCCGCACATGG
AGGACGGGAAGCCGGTGAAGAACAATGCATCCACCAGCTACGACGTGACTGCCAAGTCCATCACACCGCTGGGTGGCTTC
CCCCACTATGGGGAAGTGAACAATGACTTCGTCATGCTGAAGGGTTGTATTGCTGGTACCAAGAAGCGGGTCATTACGCT
GAGAAAGTCCCTCCTGGTGCACCACAGTCGCCAAGCCGTGGAGAATATTGAGCTCAAGTTCATTGACACCACCTCCAAGT
TCGGCCATGGCCGCTTCCAGACAGCCCAAGAGAAGAGGGCCTTCATGGGCCCCCAAAAGAAGCATCTGGAGAAGGAAACG
CCGGAGACCTCGGGAGACTTGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .02 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 38 .27 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .03 RPM |
| SRP007412_testis | 0 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008489 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000008850 | ortholog_one2one | 9 retrogenes | |
| Pongo abelii | ENSPPYG00000006973 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012921 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_916 | 68.09 | 86.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1439 | 77.66 | 96.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1473 | 65.82 | 96.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1753 | 59.11 | 71.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2150 | 64.05 | 96.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2339 | 74.11 | 96.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2462 | 73.60 | 96.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2501 | 77.31 | 87.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2646 | 57.86 | 96.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2741 | 59.01 | 54.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_2767 | 66.49 | 94.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ptro_3163 | 67.34 | 96.31 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000007617 retrocopies