RetrogeneDB ID: | retro_nleu_1673 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397303.1:6637000..6638174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3L | ||
Ensembl ID: | ENSNLEG00000008850 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.34 % |
Parental protein coverage: | 96.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSHRKFSAPRHGHLGFLPHKRSRRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKR |
MSH..FSAPRHG.LG.LP.KRS..H.GKVK..P.DDPS..VH.TAFLGYKAGMT...REV.RPG.K..K. | |
Retrocopy | MSHGRFSAPRHGSLGCLPQKRSGKHHGKVKSFPKDDPSKLVHHTAFLGYKAGMTNIVREVDRPGSKVKKK |
Parental | EEVEAVTIVETPPVVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDT |
E.VEAVTIVETPPVVVVG.VGYV.TPRGL..FKT.F.EH.S..C.R.FYK.WHKSKKKAFTK.CK...D. | |
Retrocopy | EVVEAVTIVETPPVVVVGTVGYVETPRGLQTFKTVFTEHISNACKRYFYKNWHKSKKKAFTKYCKKCQDE |
Parental | DGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSV |
DGKKQL.KDF..MK.Y..VI..I..TQM.LLP.RQ.KAH..EIQ..GGTVA.K..WA..RLE.QVPV..V | |
Retrocopy | DGKKQLEKDFSSMKRYRQVICIIAYTQMCLLPLRQRKAHLTEIQVKGGTVAKKLDWAHERLEQQVPVKKV |
Parental | FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL |
F.Q.E.IDVI..TKG.G.KGVTSRWHTKKLPRKTH.GL.KVACIGA.HPA.V....AR..QKGYHHRTE. | |
Retrocopy | FGQDEMIDVIGLTKGNGYKGVTSRWHTKKLPRKTHRGLCKVACIGAQHPAPVAFPVARVWQKGYHHRTEI |
Parental | NKKIYRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLG-GFPHYGEVNNDFVMLKGCIAGTKKRVITLRK |
NKKIY.I..G....D.KL.KNNAST.YD...K...P.G..F.HY.EV.NDFVMLK.C...TKK.V..L.K | |
Retrocopy | NKKIYKIRQGYFIKDSKLIKNNASTDYDLSDK--PPSG>AFVHY-EVTNDFVMLKDCVVDTKKQVLALHK |
Parental | SLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK |
SL.V...R.A.E...LKFIDTTSKFGHG.FQT..E..AFM.P.KK | |
Retrocopy | SLPVPTKRRALEKTDLKFIDTTSKFGHGCFQTMKERTAFMAPLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008489 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008850 | 9 retrocopies |
retro_nleu_1107, retro_nleu_1130, retro_nleu_1249, retro_nleu_1305, retro_nleu_1673 , retro_nleu_1824, retro_nleu_2046, retro_nleu_2060, retro_nleu_3126,
|
Nomascus leucogenys | ENSNLEG00000015234 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006973 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007617 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012921 | 2 retrocopies |