RetrogeneDB ID: | retro_ptro_2150 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:53924127..53925301(+) | ||
Located in intron of: | ENSPTRG00000016910 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3L | ||
Ensembl ID: | ENSPTRG00000007617 | ||
Aliases: | None | ||
Description: | ribosomal protein L3-like [Source:HGNC Symbol;Acc:10351] |
Percent Identity: | 64.05 % |
Parental protein coverage: | 96.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKR |
MSHR.FSAPRHG.L.FLP..RS..H.GKVK..P.DDPS..VHLTAFLGYKAGMT...REV..PG.K..K. | |
Retrocopy | MSHRRFSAPRHGSLSFLPQQRSRKHHGKVKSFPKDDPSKLVHLTAFLGYKAGMTNIMREVDSPGSKVNKK |
Parental | EEVEAVTIVETPPLMVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDT |
E..EAVTIVE..P..VV..VG.V.TPRGL..F.T.FAEH.SD.C.R.FYK..HKSKKKAFTK.CK...D. | |
Retrocopy | EVIEAVTIVEITPMVVVDIVGFVETPRGLQTFNTVFAEHISDACKRHFYKNRHKSKKKAFTKYCKKCQDE |
Parental | DGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSV |
DGKKQL.KDF...KKY..VI..I..TQM.LLP..Q.KAH.MEIQ..GGT.A.K..WA..RLE.QVPV..V | |
Retrocopy | DGKKQLEKDFSSTKKYRQVICIIAYTQMCLLPLHQRKAHLMEIQVKGGTMAKKLDWAHERLEQQVPVNQV |
Parental | FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL |
F...E.IDVI..TKG.G.KGVTSRWHTKKLP.KTH.GL.KVAC.GA.HPA.V....A...QKGY.H.TE. | |
Retrocopy | FEKDEMIDVIRLTKGNGYKGVTSRWHTKKLPHKTHRGLCKVACTGAQHPAPVALPVACIWQKGYCHSTEI |
Parental | NKKIFRIGRGPHMEDGKPVKNNASTSYDVTAKSITPLGG-FPHYGEVNNDFVMLKGCIAGTKKRVITLRK |
N.KI..I..G....D.K..KNNAST.YD...K...P.GG.F.HYGEV.NDFVMLK.C...TKK.V.TL.K | |
Retrocopy | N-KIYKISQGYFVRDSKRIKNNASTDYDLSDK--PPSGG>FVHYGEVTNDFVMLKDCVVDTKKQVLTLHK |
Parental | SLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK |
SL.V...R...E.I.LKFIDTTSKFGHG.FQT..EK.AFM.P.KK | |
Retrocopy | SLPVPTKRRPLEKIDLKFIDTTSKFGHGCFQTMEEKTAFMAPLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .29 RPM | 0 .02 RPM |
SRP007412_cerebellum | 0 .14 RPM | 0 .00 RPM |
SRP007412_heart | 0 .09 RPM | 38 .27 RPM |
SRP007412_kidney | 0 .29 RPM | 0 .00 RPM |
SRP007412_liver | 0 .10 RPM | 0 .03 RPM |
SRP007412_testis | 0 .21 RPM | 0 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3328 |
Gorilla gorilla | retro_ggor_1295 |
Pongo abelii | retro_pabe_2743 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008489 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008850 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000006973 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007617 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012921 | 2 retrocopies |