RetrogeneDB ID: | retro_ptro_2462 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 6:109056444..109057626(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3L | ||
Ensembl ID: | ENSPTRG00000007617 | ||
Aliases: | None | ||
Description: | ribosomal protein L3-like [Source:HGNC Symbol;Acc:10351] |
Percent Identity: | 73.6 % |
Parental protein coverage: | 96.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKR |
MSHRKFSAPRHG.LGFLP.KRS.RHRGKVK..P.DDPS.PVHLTAFLGYKAGMTH..REV..P..K..K. | |
Retrocopy | MSHRKFSAPRHGSLGFLPQKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIMREVDSPASKVNKK |
Parental | EEVEAVTIVETPPLMVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDT |
E.VEAVTIVETPP..VVG.VGYV.TPRGLR.FKT.FAEH.S.EC.RRFYK.WH.SKKKAFTK..K.W.D. | |
Retrocopy | EVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISNECKRRFYKNWHTSKKKAFTKYRKKWQDE |
Parental | DGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSV |
D.KKQL.KDF..MKKYC.VIR.I.HTQM.LL..RQKKAH.MEIQ.NGGTVAEK..W...RLE.QV.V..V | |
Retrocopy | DVKKQLEKDFSSMKKYCHVIRIIAHTQMRLLLLRQKKAHLMEIQVNGGTVAEKLDWVCERLEQQVNVNQV |
Parental | FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL |
F...E.IDVI.VTKG.G.KGVTSRWHTKKLPR.TH.GLRKVACIGAWHPARV..S.ARAGQKGY.HRTE. | |
Retrocopy | FGKDEMIDVIGVTKGKGYKGVTSRWHTKKLPRETHRGLRKVACIGAWHPARVAFSVARAGQKGYRHRTEI |
Parental | NKKIFRIGRGPHMEDGKPVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKS |
NKKI..IG.G....DGK..KNNAST..D...KS..PLGGF.HYGEV.ND.VMLKGC..GTKKRV.TL..S | |
Retrocopy | NKKIYKIGQGYLIKDGKLIKNNASTDSDLSDKSTNPLGGFVHYGEVTNDLVMLKGCVVGTKKRVLTLHES |
Parental | LLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK |
LLV...RQA.E.I.LKFIDTTSKFGHG.FQT...K.AFMGP.KK | |
Retrocopy | LLVQMKRQALEKIDLKFIDTTSKFGHGCFQTME*KKAFMGPLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .20 RPM | 0 .02 RPM |
SRP007412_cerebellum | 0 .36 RPM | 0 .00 RPM |
SRP007412_heart | 0 .09 RPM | 38 .27 RPM |
SRP007412_kidney | 0 .63 RPM | 0 .00 RPM |
SRP007412_liver | 0 .59 RPM | 0 .03 RPM |
SRP007412_testis | 0 .42 RPM | 0 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008489 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008850 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000006973 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007617 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012921 | 2 retrocopies |