RetrogeneDB ID: | retro_ptro_1439 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 20:45382742..45383924(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000042351 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3L | ||
Ensembl ID: | ENSPTRG00000007617 | ||
Aliases: | None | ||
Description: | ribosomal protein L3-like [Source:HGNC Symbol;Acc:10351] |
Percent Identity: | 77.66 % |
Parental protein coverage: | 96.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKR |
MSHRKFSAPRHG.LGFLP.KRS.RHRGKVK..P.DDPS.PVHLTAFLGYKAGMTH..REV.RPG.K..K. | |
Retrocopy | MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKK |
Parental | EEVEAVTIVETPPLMVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDT |
E.VEAVTIVETPP..VVG.VGYV.TPRGLR.FKT.FAEH.SDEC.RRFYK.WHKSKKKAFTK.CK.W.D. | |
Retrocopy | EVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDE |
Parental | DGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSV |
DGKKQL.KDF..MKKYC.VI.VI.HTQM.LLP.RQKKAH.MEIQ.NGGTVA.K..WA..RLE.QVPV..V | |
Retrocopy | DGKKQLEKDFSSMKKYCQVIHVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAKKLDWARERLEQQVPVNQV |
Parental | FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL |
F.Q.E.IDVI.VTKG.G.KGVTSRWHTKKLPRKTH.GLRKVACIGAWHPARV..S.ARAGQKGYHHRTE. | |
Retrocopy | FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI |
Parental | NKKIFRIGRGPHMEDGKPVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKS |
NKKI..IG.G....DGK..KNNAST.YD...KSI.PLGGF.HYGEV.NDFVMLKGC..GTKKRV.TLRKS | |
Retrocopy | NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKS |
Parental | LLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK |
LLV.....A.E.I.LKFIDTTSKFGHGRFQT..EK.AFMGP.KK | |
Retrocopy | LLVQTKQRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 193 .51 RPM | 0 .02 RPM |
SRP007412_cerebellum | 128 .66 RPM | 0 .00 RPM |
SRP007412_heart | 30 .98 RPM | 38 .27 RPM |
SRP007412_kidney | 171 .53 RPM | 0 .00 RPM |
SRP007412_liver | 140 .56 RPM | 0 .03 RPM |
SRP007412_testis | 41 .84 RPM | 0 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008489 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008850 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000006973 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007617 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012921 | 2 retrocopies |