RetrogeneDB ID: | retro_ptro_1753 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2B:241650451..241651320(-) | ||
Located in intron of: | ENSPTRG00000013070 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3L | ||
Ensembl ID: | ENSPTRG00000007617 | ||
Aliases: | None | ||
Description: | ribosomal protein L3-like [Source:HGNC Symbol;Acc:10351] |
Percent Identity: | 59.11 % |
Parental protein coverage: | 71.01 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIV- |
P.GL..FKT.FA...SDEC...F...WHKSK.KAFT..CK.W...DGKKQL..DF..MKK.C.VI.V... | |
Retrocopy | PQGLQTFKTVFAKYISDECKKHFSNNWHKSKRKAFTSYCKKWQNKDGKKQLEQDFSSMKKHCQVIHVTA< |
Parental | HTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSR |
HT...LLP..QKKA..MEIQ.N.GT.A.K..W...RLE...PV..VF.Q.E.IDV..VTKG...KGVTS. | |
Retrocopy | HTHIYLLPPCQKKAPLMEIQMNRGTMAKKLDWGRERLEQPIPVNQVFGQDEMIDVFKVTKGKDYKGVTSH |
Parental | WHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKK-IFRIGRGPHMEDGKPVKNNA |
.HTKKLP.KTH.GL.KVA.IG.WHPA.V..S.ARAGQKGYHH.TE.....I..IG.G....D.K..KNNA | |
Retrocopy | *HTKKLPCKTH*GLCKVAWIGSWHPACVAFSVARAGQKGYHHHTEITRRLISKIGQGYVIKDDKLIKNNA |
Parental | STSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSK |
ST..D...KSI..LGGF..YGEV...FVMLK.C..GTKK.V.TL.KSLL......A.E...LKFIDTT.K | |
Retrocopy | STDHDLPDKSINSLGGFVPYGEVTSGFVMLKECVVGTKK*VLTLHKSLLAETKWRALEKTDLKFIDTTAK |
Parental | FGHGRFQTAQE |
FGHG..QT..E | |
Retrocopy | FGHGCSQTMEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 0 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 38 .27 RPM |
SRP007412_kidney | 0 .08 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .03 RPM |
SRP007412_testis | 0 .00 RPM | 0 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2403 |
Gorilla gorilla | retro_ggor_1822 |
Pongo abelii | retro_pabe_2167 |
Macaca mulatta | retro_mmul_973 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008489 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008850 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000006973 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007617 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012921 | 2 retrocopies |