Parental gene:

RPL27, ENSPTRG00000009232

Aliases:None
Description:ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:14380411..14385311(-)


>ENSPTRG00000009232
ATGGGCAAGTTCATGAAACCTGGGAAGGTGGTGCTTGTCCTGGCTGGACGCTACTCCGGACGCAAAGCTGTCATCGTGAA
GAACATTGATGATGGCACCTCAGATCGCCCCTACAGCCATGCTCTGGTGGCTGGAATTGACCGCTACCCCCGCAAAGTGA
CAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTA
ATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAA
ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAGATACAAGACAGGCAAGAACAAGTGGTTCTTCCAGAAAC
TGCGGTTTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 138 .35 RPM
SRP007412_cerebellum 236 .06 RPM
SRP007412_heart 189 .74 RPM
SRP007412_kidney 287 .80 RPM
SRP007412_liver 319 .45 RPM
SRP007412_testis 55 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000200 possible_ortholog 3 retrogenes
retro_amel_122, retro_amel_37, retro_amel_674,
Bos taurus ENSBTAG00000017441 possible_ortholog 6 retrogenes
retro_btau_1113, retro_btau_129, retro_btau_1565, retro_btau_1855, retro_btau_338, retro_btau_394,
Canis familiaris ENSCAFG00000014630 possible_ortholog 6 retrogenes
retro_cfam_1193, retro_cfam_2109, retro_cfam_339, retro_cfam_364, retro_cfam_947, retro_cfam_959,
Callithrix jacchus ENSCJAG00000013067 ortholog_one2many 9 retrogenes
retro_cjac_1345, retro_cjac_1350, retro_cjac_1543, retro_cjac_1630, retro_cjac_2210, retro_cjac_275, retro_cjac_2828, retro_cjac_369, retro_cjac_776,
Felis catus ENSFCAG00000013142 possible_ortholog 6 retrogenes
retro_fcat_1026, retro_fcat_1184, retro_fcat_1824, retro_fcat_228, retro_fcat_698, retro_fcat_78,
Homo sapiens ENSG00000131469 ortholog_one2one 6 retrogenes
retro_hsap_1161, retro_hsap_1312, retro_hsap_2112, retro_hsap_2204, retro_hsap_238, retro_hsap_3787,
Gorilla gorilla ENSGGOG00000026039 ortholog_one2one 6 retrogenes
retro_ggor_1741, retro_ggor_1852, retro_ggor_2546, retro_ggor_2630, retro_ggor_298, retro_ggor_907,
Loxodonta africana ENSLAFG00000014220 possible_ortholog 3 retrogenes
retro_lafr_443, retro_lafr_739, retro_lafr_965,
Microcebus murinus ENSMICG00000014214 ortholog_one2one 5 retrogenes
retro_mmur_1340, retro_mmur_1498, retro_mmur_1542, retro_mmur_673, retro_mmur_695,
Myotis lucifugus ENSMLUG00000004119 ortholog_one2many 1 retrogene
retro_mluc_359,
Macaca mulatta ENSMMUG00000008090 possible_ortholog 7 retrogenes
retro_mmul_1646, retro_mmul_1997, retro_mmul_418, retro_mmul_478, retro_mmul_52, retro_mmul_680, retro_mmul_925,
Monodelphis domestica ENSMODG00000015128 ortholog_one2one 1 retrogene
retro_mdom_1141,
Mus musculus ENSMUSG00000063316 possible_ortholog 2 retrogenes
retro_mmus_223, retro_mmus_277,
Nomascus leucogenys ENSNLEG00000011901 ortholog_one2many 2 retrogenes
retro_nleu_334, retro_nleu_45,
Oryctolagus cuniculus ENSOCUG00000003872 ortholog_one2many 1 retrogene
retro_ocun_263,
Otolemur garnettii ENSOGAG00000003940 ortholog_one2one 14 retrogenes
retro_ogar_1091, retro_ogar_1297, retro_ogar_1478, retro_ogar_1692, retro_ogar_1887, retro_ogar_2189, retro_ogar_2354, retro_ogar_2625, retro_ogar_2687, retro_ogar_2915, retro_ogar_3207, retro_ogar_3294, retro_ogar_3381, retro_ogar_618,
Pteropus vampyrus ENSPVAG00000008817 ortholog_one2one 4 retrogenes
retro_pvam_1084, retro_pvam_1231, retro_pvam_25, retro_pvam_509,
Rattus norvegicus ENSRNOG00000020674 possible_ortholog 8 retrogenes
retro_rnor_1150, retro_rnor_125, retro_rnor_1257, retro_rnor_1968, retro_rnor_2594, retro_rnor_2989, retro_rnor_386, retro_rnor_414,
Sarcophilus harrisii ENSSHAG00000012042 ortholog_one2many 4 retrogenes
retro_shar_10, retro_shar_253, retro_shar_730, retro_shar_741,
Tarsius syrichta ENSTSYG00000003167 ortholog_one2one 12 retrogenes
retro_tsyr_1032, retro_tsyr_1154, retro_tsyr_1711, retro_tsyr_2036, retro_tsyr_381, retro_tsyr_476, retro_tsyr_602, retro_tsyr_787, retro_tsyr_816, retro_tsyr_822, retro_tsyr_95, retro_tsyr_989,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_127 76.06 51.47
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2. retro_ptro_208 75.00 100.00
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3. retro_ptro_794 69.07 69.85
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4. retro_ptro_900 68.61 100.00
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5. retro_ptro_1673 78.10 100.00
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6. retro_ptro_2569 87.50 100.00
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Download FASTA sequences of all ENSPTRG00000009232 retrocopies