RetrogeneDB ID: | retro_cfam_364 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:55356823..55357231(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27 | ||
Ensembl ID: | ENSCAFG00000014630 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein L27 (RPL27), mRNA. [Source:RefSeq mRNA;Acc:NM_001003102] |
Percent Identity: | 72.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS |
MGKFMK..KVVLV....YSG.KAVI...IDDGTSD.PYSHALVAGID.YP.KV.AAM.KKKIA.R.KIKS | |
Retrocopy | MGKFMKARKVVLVQTRCYSGCKAVIMRSIDDGTSDHPYSHALVAGIDCYPCKVPAAMHKKKIAMR*KIKS |
Parental | FVKVYNYNH-LMPTRYSVDIPLD-KTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF |
F.KVYNYN...MPTRYSVDIPLD.KTV.N.DVF..PALK.KA..EA.V.F.ERYKT.KNK..F..L.F | |
Retrocopy | FAKVYNYND<FMPTRYSVDIPLD>KTVTNNDVF*EPALKLKA**EAEVQFKERYKTYKNKRLFKRLQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 185 .72 RPM |
SRP017611_brain | 0 .00 RPM | 68 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 429 .44 RPM |
SRP017611_liver | 0 .00 RPM | 94 .34 RPM |