RetrogeneDB ID: | retro_fcat_228 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:43606409..43606726(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013142 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.03 % |
Parental protein coverage: | 73.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FMKPGKVVLVLAGR--YSGRKAVIVKNIDDGTSDRPYSHAL-VAGIDRYPRKVTAAMGKKKIAKRSKI-K |
FM.P...VLVLA....YSG.KA.IVKN.DDGTSD.PYSHAL.V...D.Y..KVTAAM.KKKI.KRSKI.. | |
Retrocopy | FMAPQTLVLVLALAQCYSGCKAAIVKNNDDGTSDHPYSHALSVTEMDCYSHKVTAAMNKKKIVKRSKI<Q |
Parental | SFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPAL |
.FVKVYNYNHLMPT.YSVDI.LDKTV..K..FRDP.L | |
Retrocopy | CFVKVYNYNHLMPTGYSVDISLDKTVIIKGIFRDPTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 52 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .38 RPM |
SRP017611_liver | 0 .00 RPM | 104 .73 RPM |