RetrogeneDB ID: | retro_mmul_52 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:218976674..218977082(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000022179 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27 | ||
Ensembl ID: | ENSMMUG00000008090 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L27 [Source:RefSeq peptide;Acc:NP_001252751] |
Percent Identity: | 94.07 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSF |
GKFMKPG.VVL.LAGRYSGRKAVIV.NIDDGTSDRPYSHALVAGI.RYPRKVTAA.G.KKIAKRSKIKSF | |
Retrocopy | GKFMKPGRVVLALAGRYSGRKAVIVRNIDDGTSDRPYSHALVAGINRYPRKVTAAIG-KKIAKRSKIKSF |
Parental | VKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF |
VKVYNYNHLMPTRYSVDIPLDKTV.NKDVFRDPALKRKARREAKVKFEER.KTGKNKWFFQKLRF | |
Retrocopy | VKVYNYNHLMPTRYSVDIPLDKTVINKDVFRDPALKRKARREAKVKFEERCKTGKNKWFFQKLRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 57 .93 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 91 .94 RPM |
SRP007412_cerebellum | 0 .26 RPM | 56 .95 RPM |
SRP007412_heart | 0 .18 RPM | 110 .41 RPM |
SRP007412_kidney | 0 .00 RPM | 99 .41 RPM |
SRP007412_liver | 0 .16 RPM | 160 .08 RPM |
SRP007412_testis | 0 .08 RPM | 50 .55 RPM |