Parental gene: | TPM4, ENSPTRG00000010637 |
| Aliases: | None |
| Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 19:16341131..16368642(+) |
>ENSPTRG00000010637
ATGGCCGGCCTCAACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCGGAAGACCG
CGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAAGCTGAAGGTGATGTGGCCGCCCTCAACC
GACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACGGCCCTGCAGAAGCTGGAGGAGGCA
GAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAGGATGAGGAGAAGATGGAGAT
TCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGCAAATACGAGGAGGTAGCTCGTAAGCTGG
TCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAA
CTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGACAAATATGAAGA
AGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACGGTTGCAAAACTGG
AAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAG
ACACTAAACGAACTTAACTGTATATAA
ATGGCCGGCCTCAACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCGGAAGACCG
CGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAAGCTGAAGGTGATGTGGCCGCCCTCAACC
GACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACGGCCCTGCAGAAGCTGGAGGAGGCA
GAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAGGATGAGGAGAAGATGGAGAT
TCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGCAAATACGAGGAGGTAGCTCGTAAGCTGG
TCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAA
CTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGACAAATATGAAGA
AGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACGGTTGCAAAACTGG
AAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAG
ACACTAAACGAACTTAACTGTATATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 31 .82 RPM |
| SRP007412_cerebellum | 94 .89 RPM |
| SRP007412_heart | 42 .12 RPM |
| SRP007412_kidney | 39 .70 RPM |
| SRP007412_liver | 22 .91 RPM |
| SRP007412_testis | 32 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004553 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000015796 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014135 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014510 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000014882 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031799 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000005413 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009755 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000024252 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012927 | ortholog_one2one | 7 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010642 | ortholog_one2one | 9 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014542 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_516 | 75.60 | 82.26 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1002 | 71.73 | 76.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1109 | 73.47 | 98.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1341 | 66.67 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1342 | 66.67 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1750 | 73.44 | 97.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1768 | 94.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2648 | 58.13 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2694 | 90.67 | 88.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2830 | 97.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000010637 retrocopies