RetrogeneDB ID: | retro_ptro_1002 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 15:33452350..33452915(+) | ||
Located in intron of: | ENSPTRG00000006899 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM4 | ||
Ensembl ID: | ENSPTRG00000010637 | ||
Aliases: | None | ||
Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
Percent Identity: | 71.73 % |
Parental protein coverage: | 76.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERLATALQKLEE |
VKRKIQ..QQQAD.AE.RA..L..E..GER..RE.AE..VA.LNRRI.LVEEELDRAQERLATALQKLEE | |
Retrocopy | VKRKIQVVQQQADDAEERAERLRQEVEGERRAREQAEAEVASLNRRIKLVEEELDRAQERLATALQKLEE |
Parental | AEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE-ERAE |
AEKAADESE.GMKV.ENRA.KDEEK.E.QE.Q.KEAKHIAEEADRKYEEVA.K.VI.EG.LER.E.E.AE | |
Retrocopy | AEKAADESEIGMKVFENRALKDEEKRELQEIQPKEAKHIAEEADRKYEEVACKWVIIEGDLERTE<E*AE |
Parental | VSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLL-SDKLKE |
..E..C....E.......NLK.L.AA.E.YS.KEDKYEEEIK.L..DKLKE | |
Retrocopy | LAEPRCREMDEQIRLMDQNLKCLSAAEENYSQKEDKYEEEIKIL<TDKLKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 31 .82 RPM |
SRP007412_cerebellum | 0 .29 RPM | 94 .89 RPM |
SRP007412_heart | 0 .29 RPM | 42 .12 RPM |
SRP007412_kidney | 0 .58 RPM | 39 .70 RPM |
SRP007412_liver | 0 .65 RPM | 22 .91 RPM |
SRP007412_testis | 0 .11 RPM | 32 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1482 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015796 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014510 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000014882 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005413 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010637 | 10 retrocopies |
retro_ptro_1002 , retro_ptro_1109, retro_ptro_1341, retro_ptro_1342, retro_ptro_1750, retro_ptro_1768, retro_ptro_2648, retro_ptro_2694, retro_ptro_2830, retro_ptro_516,
|
Pteropus vampyrus | ENSPVAG00000009755 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012927 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010642 | 9 retrocopies | |
Tursiops truncatus | ENSTTRG00000014542 | 2 retrocopies |