RetrogeneDB ID: | retro_tsyr_704 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_1751:16475..17094(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM4 | ||
Ensembl ID: | ENSTSYG00000010642 | ||
Aliases: | None | ||
Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
Percent Identity: | 64.59 % |
Parental protein coverage: | 83.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQE |
K....AE..VA.LN.RIQLVE.ELDRAQ.RLATALQKLEEAEKAA.ESERGMKVIENRA.KDE.KME.QE | |
Retrocopy | KTLEQAEVEVASLNCRIQLVEQELDRAQKRLATALQKLEEAEKAA-ESERGMKVIENRALKDE-KMELQE |
Parental | LHLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLE-AASEKX |
..LKEAKH.AEEADRKYE.VARKLV..E..LERAEE.A...E..C..L.E.......NLK.L...A.... | |
Retrocopy | IQLKEAKHMAEEADRKYEGVARKLVVIERVLERAEEGAVPAESGCTELDEQIRLLGQNLKWLS>SAADNM |
Parental | XEKE-DKYEEK---LSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN |
.....DKYEE....L.DKLKEAE.RAEFAER.V.KL.K.I.DLE.KL...KEE......TLDQTL..LN | |
Retrocopy | YSQKEDKYEEEIKMLTDKLKEAEVRAEFAERSVPKLGKAINDLEDKLKCTKEEHL*TQRTLDQTLLDLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015796 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014510 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000014882 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005413 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010637 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009755 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012927 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010642 | 9 retrocopies |
retro_tsyr_1377, retro_tsyr_1613, retro_tsyr_1642, retro_tsyr_1853, retro_tsyr_628, retro_tsyr_694, retro_tsyr_704 , retro_tsyr_742, retro_tsyr_749,
|
Tursiops truncatus | ENSTTRG00000014542 | 2 retrocopies |