RetrogeneDB ID: | retro_tsyr_1642 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_525982:20..628(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM4 | ||
Ensembl ID: | ENSTSYG00000010642 | ||
Aliases: | None | ||
Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
Percent Identity: | 72.55 % |
Parental protein coverage: | 82.3 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRA |
.DAQEKLEL.EKK...AE.DVA.LNR.IQLVEEELDRAQERLATALQKLEEAEKA.DESERGMKVIE.RA | |
Retrocopy | QDAQEKLELVEKKVTNAESDVASLNRCIQLVEEELDRAQERLATALQKLEEAEKATDESERGMKVIESRA |
Parental | MKDEEKMEIQELHLKEAKHIAEEADRKYEEVARKLVILE-GELERAEERAEVSELKCGDLEEELKNVTNN |
.KDEEK.EIQE..LK.AKHIAE.A..KYEEVA.KLVI.E.G.LERAEE.AE.SE.....LEE.L...... | |
Retrocopy | QKDEEKIEIQEIQLKAAKHIAEDANLKYEEVAWKLVIIE<GDLERAEELAELSEGQV**LEEQLRIMDQT |
Parental | LKSLEAASEKXXEKEDKYEE---KLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEEN |
LK.L.AA..K...KEDK.EE....LSDK.KEAETR.EFAER.V.KLEK.IDDLEE..A.AKEEN | |
Retrocopy | LKALMAAKDKYLQKEDK*EEGIKVLSDK*KEAETRTEFAERSVTKLEKSIDDLEEEVAHAKEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015796 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014510 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000014882 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005413 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010637 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009755 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012927 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010642 | 9 retrocopies |
retro_tsyr_1377, retro_tsyr_1613, retro_tsyr_1642 , retro_tsyr_1853, retro_tsyr_628, retro_tsyr_694, retro_tsyr_704, retro_tsyr_742, retro_tsyr_749,
|
Tursiops truncatus | ENSTTRG00000014542 | 2 retrocopies |