RetrogeneDB ID: | retro_rnor_1966 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:47367632..47367946(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nme2 | ||
Ensembl ID: | ENSRNOG00000002671 | ||
Aliases: | Nme2, NDKB, nm23-2, p18-12d | ||
Description: | Nucleoside diphosphate kinase B [Source:UniProtKB/Swiss-Prot;Acc:P19804] |
Percent Identity: | 63.89 % |
Parental protein coverage: | 68.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EHLKQHYIDLKDRPFF-PGL-VKYMNSGPVVAMV-WEGLNVVKTGRV-MLGETNPADSKPGTIRGDFCIQ |
..LKQHYI.LK..PF..PG..V....S...VAMV.W.GLN.VKT.R..MLG.T..A.SKPGTI.GDFCIQ | |
Retrocopy | QNLKQHYILLKNHPFL<PGAKVHELRSRLLVAMV<WKGLNLVKTRRA>MLGDTKRAESKPGTICGDFCIQ |
Parental | VGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDW |
V.RN...G.D.VE..E.EIGLWFKP.ELID.KSCAH.W | |
Retrocopy | VVRNLFRGGDAVEKTEEEIGLWFKPGELIDSKSCAHEW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 76 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 163 .92 RPM |
SRP017611_liver | 0 .00 RPM | 72 .08 RPM |