RetrogeneDB ID: | retro_rnor_628 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:195947262..195947593(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nme2 | ||
Ensembl ID: | ENSRNOG00000002671 | ||
Aliases: | Nme2, NDKB, nm23-2, p18-12d | ||
Description: | Nucleoside diphosphate kinase B [Source:UniProtKB/Swiss-Prot;Acc:P19804] |
Percent Identity: | 68.42 % |
Parental protein coverage: | 71.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ASEEHLKQ---HYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRV-MLGETNPADSKPGTIRGDF |
.S..HLK.....YIDLKD.PFF.GLV.YMNS.PV.AM.W..LNVVKTG...MLGET.PADSKP..I..DF | |
Retrocopy | SSFRHLKNT*HSYIDLKDCPFFLGLVRYMNSTPVMAMLWKRLNVVKTGWI<MLGETSPADSKPSII-*DF |
Parental | CIQVGRNIIHGSDSVESAEK-EIGLWFKPEELIDYKSCAHDWVY |
C.QV.RN.IHG.D.VES.EK....L.FKPEELIDYKSC.HDWVY | |
Retrocopy | CMQVVRNNIHGNDTVESTEK<GVSLCFKPEELIDYKSCGHDWVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 76 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 163 .92 RPM |
SRP017611_liver | 0 .00 RPM | 72 .08 RPM |