RetrogeneDB ID: | retro_rnor_2732 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:53285316..53285877(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000028330 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bnip3 | ||
Ensembl ID: | ENSRNOG00000017243 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B interacting protein 3 [Source:RefSeq peptide;Acc:NP_445872] |
Percent Identity: | 98.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSQSGEENLQGSWVELHFSNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT |
MSQSGEENLQGSWVE.HFSNGNGSS.PASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT | |
Retrocopy | MSQSGEENLQGSWVEQHFSNGNGSSIPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT |
Parental | NRAEIDTHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENVPPKEFLFKHPKRTATLSMRN |
NRAEIDTHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENVP.KEFLFKHPKRTATLSMRN | |
Retrocopy | NRAEIDTHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENVPHKEFLFKHPKRTATLSMRN |
Parental | TSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
TSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF | |
Retrocopy | TSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 49 .18 RPM |
SRP017611_kidney | 0 .35 RPM | 64 .55 RPM |
SRP017611_liver | 0 .07 RPM | 15 .26 RPM |