RetrogeneDB ID: | retro_rnor_1070 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:83635930..83636305(-) | ||
Located in intron of: | ENSRNOG00000017775 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bnip3 | ||
Ensembl ID: | ENSRNOG00000017243 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B interacting protein 3 [Source:RefSeq peptide;Acc:NP_445872] |
Percent Identity: | 56.49 % |
Parental protein coverage: | 68.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SKSSHCDSPPRSQTPQDT-NRAEIDTHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENVP |
SKS.....PP.SQTPQD...RAE..TH.........SEEDY.ERR.EV..ILKKNSDWIW.WS..PEN.P | |
Retrocopy | SKSPQGNNPPPSQTPQDI<HRAE--THPYCWR*REHSEEDYTERRGEVKRILKKNSDWIWAWSRQPENIP |
Parental | PKEFLFKHPKRTATLSMRNTSVMKKGGIFSADFLKV-FLPSLLLSHLLAIGLGI-YIGRRL |
...FLFK.....A.L..RN.S.....GI..ADFL.V.FLP.LL..H.LA.GLGI...GRRL | |
Retrocopy | RRGFLFKIWEVHAILRSRNKSSEERVGIVPADFLTV<FLPTLLPPHPLAFGLGI<HAGRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 64 .55 RPM |
SRP017611_liver | 0 .00 RPM | 15 .26 RPM |