Parental gene:

RGD1565363, ENSRNOG00000047988

Aliases:None
Description:Protein LOC100363408; RCG40058 [Source:UniProtKB/TrEMBL;Acc:D4A9P7]
Organism:Rat (Rattus norvegicus)
Coordinates:1:205099359..205099958(+)


>ENSRNOG00000047988
ATGGAACTCAGCGCCGACTACCTCCGCGAGAAGCTGCGGCAGGACCTGGAGGCAGAGCATGTGGAGGTGGAGGACACGAC
TCTGAACCGTTGCGCGACCAGCTTCCGAGTCCTGGTGGTGTCGGCTAAGTTCGAGGGAAAGCCACTGCTCCAGAGACACC
GGCTGGTGAACGAGTGCTTAGCCGAAGAGCTCCCGCACATCCATGCCTTTGAGCAGAAAACTCTGACCCCAGAGCAGTGG
ACCCGACAGCGGCAGGAATGA

Library Parental gene expression (RPM)
SRP017611_liver 10 .35 RPM
SRP017611_kidney 11 .10 RPM
SRP017611_brain 16 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006661 ortholog_one2many 1 retrogene
retro_cjac_1327,
Echinops telfairi ENSETEG00000006548 ortholog_one2many 1 retrogene
retro_etel_457,
Homo sapiens ENSG00000169627 ortholog_many2many 1 retrogene
retro_hsap_2644,
Gorilla gorilla ENSGGOG00000012724 ortholog_many2many 2 retrogenes
retro_ggor_1847, retro_ggor_75,
Loxodonta africana ENSLAFG00000017910 ortholog_one2many 1 retrogene
retro_lafr_712,
Myotis lucifugus ENSMLUG00000003449 ortholog_one2many 1 retrogene
retro_mluc_2380,
Macaca mulatta ENSMMUG00000007331 ortholog_one2many 3 retrogenes
retro_mmul_1344, retro_mmul_1522, retro_mmul_1752,
Monodelphis domestica ENSMODG00000015658 ortholog_one2many 1 retrogene
retro_mdom_1704,
Nomascus leucogenys ENSNLEG00000001018 ortholog_one2many 2 retrogenes
retro_nleu_1222, retro_nleu_650,
Oryctolagus cuniculus ENSOCUG00000007562 ortholog_many2many 1 retrogene
retro_ocun_241,
Ochotona princeps ENSOPRG00000002109 ortholog_many2many 2 retrogenes
retro_opri_243, retro_opri_492,
Pongo abelii ENSPPYG00000007237 ortholog_one2many 2 retrogenes
retro_pabe_1608, retro_pabe_2326,
Pan troglodytes ENSPTRG00000007990 ortholog_one2many 2 retrogenes
retro_ptro_1284, retro_ptro_1781,
Sorex araneus ENSSARG00000003579 ortholog_one2many 2 retrogenes
retro_sara_106, retro_sara_278,
Tarsius syrichta ENSTSYG00000006274 ortholog_many2many 1 retrogene
retro_tsyr_1321,
Tursiops truncatus ENSTTRG00000005543 ortholog_one2many 2 retrogenes
retro_ttru_127, retro_ttru_1700,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_322 87.21 100.00
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2. retro_rnor_379 98.84 100.00
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Download FASTA sequences of all ENSRNOG00000047988 retrocopies