RetrogeneDB ID: | retro_rnor_322 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:872143..872401(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000034215 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1565363 | ||
Ensembl ID: | ENSRNOG00000047988 | ||
Aliases: | None | ||
Description: | Protein LOC100363408; RCG40058 [Source:UniProtKB/TrEMBL;Acc:D4A9P7] |
Percent Identity: | 87.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAF |
.ELSADYLR.KL.QDLE.E..EVEDTTLNRCATSFR.LVVSAKFEGKPLLQRH.LVNEC.AEEL.HIHAF | |
Retrocopy | VELSADYLRGKLQQDLETEQEEVEDTTLNRCATSFRFLVVSAKFEGKPLLQRHQLVNECFAEELSHIHAF |
Parental | EQKTLTPEQWTRQRQE |
EQKTLTPEQWTRQR.E | |
Retrocopy | EQKTLTPEQWTRQRRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .10 RPM |
SRP017611_liver | 0 .00 RPM | 10 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006661 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006548 | 1 retrocopy | |
Homo sapiens | ENSG00000169627 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012724 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000017910 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007331 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000015658 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001018 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007562 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002109 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007237 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000047988 | 2 retrocopies |
retro_rnor_322 , retro_rnor_379,
|
Sorex araneus | ENSSARG00000003579 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006274 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005543 | 2 retrocopies |