Parental gene:

RPL17, ENSSHAG00000003060

Aliases:None
Description:ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL841194.1:50029..52363(-)


>ENSSHAG00000003060
AAAATGGTGAGGTACTCTCTTGATCCAGAGAACCCCACAAAATCATGCAAATCAAGGGGCTCAAATCTCCGGGTCCACTT
CAAGAATACCCGGGAAACAGCCCAAGCTATCAAGGGCATGCATATCAGAAAAGCTACCAAGTATTTGAAAGATGTCACAT
TGAAAAAACAATGTGTGCCTTTCCGCCGATATAATGGTGGAGTTGGCAGGTGTGCTCAGGCTAAGCAATGGGGTTGGACA
CAGGGTCGGTGGCCCAAAAAGAGTGCCGAGTTCTTGCTGCATATGCTTAAAAATGCAGAGAGTAATGCAGAGCTGAAGGG
TTTGGATGTGGATTCTCTTGTCATTGAGCATATTCAGGTTAACAAGGCCCCCAAAATGCGACGGCGTACTTACAGGGCTC
ATGGTCGAATCAACCCATACATGAGTTCTCCTTGCCACATTGAGATGATCCTTACTGAAAAGGAACAAATTGTTCCTAAA
CCAGAAGAGGAAGTTGCTCAAAAGAAAAAGATATCCCAAAAGAAATTGAAGAAGCAAAAGCTTATGGCACGAGAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_206 67.47 88.65
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2. retro_shar_214 79.29 89.19
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3. retro_shar_279 71.22 73.51
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4. retro_shar_387 73.20 82.16
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5. retro_shar_457 61.29 81.62
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6. retro_shar_586 74.79 64.32
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7. retro_shar_593 59.02 65.41
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8. retro_shar_606 67.07 89.73
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9. retro_shar_713 72.50 63.78
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10. retro_shar_743 59.20 65.95
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11. retro_shar_751 70.15 70.27
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12. retro_shar_800 68.78 100.00
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13. retro_shar_802 65.52 62.70
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14. retro_shar_817 84.25 67.57
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Download FASTA sequences of all ENSSHAG00000003060 retrocopies