RetrogeneDB ID:

retro_mluc_2125

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430049:283261..283781(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000029264
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2125
CCCCTGGAAATTGTTTGCTACTCACTTAATCCAGAAAACCCCACAAAATCATGCAAATCAAGAGGTTCAAGTCTGCGTGC
TCACTTTAAGGACGCTCACGAAACTGCTCAGGCCAGCAAGGGCATGCATGTCTGAAAAGCCACAGAGTATCTGAGGATGT
CCCTTTACACAAGCGACGGGTGCCGTTCCGTCGCTACCATGGTGGGGCTGGTCAGCGTGCCCGGGGCAAACAGTGGGGCT
GGGCGCGGGGTCGGCAGAGTGCTCACTTTTTGCTGCACTTGCTTAAAAATACAGACAGTATCGCAGAGCTTAAGGGTTTA
GATGTAGATTCTCTGGTCATTGAGCACCTCCAGGTGAAGAGAGCTCCCAAGATGCAGCGCAGAACTCACAGAGCCACGGG
CGATTCACCCACGCGTGCCCTCCCGGCCACAGGAAAGGATCCTCACTGAAAAAGAGCCGATTGTTCCTCAGCCAGAGAGG
AGGCTGCACAGAAAAAACCATCTCCCAGAAGAAACAAAAA

ORF - retro_mluc_2125 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.93 %
Parental protein coverage: 95.72 %
Number of stop codons detected: 1
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalPLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLK-DVTLKKQCVPFRRYNGG
PL..V.YSL.PENPTKSCKSRGS.LR.HFK...ETAQA.KGMH..KAT.YL..DV.L.K..VPFRRY.GG
RetrocopyPLEIVCYSLNPENPTKSCKSRGSSLRAHFKDAHETAQASKGMHV*KATEYLR<DVPLHKRRVPFRRYHGG
ParentalVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRA-HGR
.G..A..KQWGW..GR....SA.FLLH.LKN..S.AELKGLDVDSLVIEH.QV..APKM.RRT.RA.HGR
RetrocopyAGQRARGKQWGWARGR---QSAHFLLHLLKNTDSIAELKGLDVDSLVIEHLQVKRAPKMQRRTHRA<HGR
Parental-INPYMSSPCHIEMILTEKEQIVPKPE-EEVAQK-KKISQKKLK
.I.P...S....E.ILTEKE.IVP.PE.EE.AQK.K.ISQKK.K
Retrocopy<IHPRVPSRPQ-ERILTEKEPIVPQPE<EEAAQK<KTISQKKQK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_2125 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 598 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000229025 retrocopies
Choloepus hoffmanni ENSCHOG0000000787250 retrocopies
Cavia porcellus ENSCPOG0000001933731 retrocopies
Equus caballus ENSECAG000000115479 retrocopies
Echinops telfairi ENSETEG0000001132210 retrocopies
Homo sapiens ENSG000002154721 retrocopy
Latimeria chalumnae ENSLACG000000088351 retrocopy
Macropus eugenii ENSMEUG0000001670926 retrocopies
Microcebus murinus ENSMICG0000001710214 retrocopies
Myotis lucifugus ENSMLUG0000002555422 retrocopies
Myotis lucifugus ENSMLUG00000029264 36 retrocopies
Macaca mulatta ENSMMUG0000001883726 retrocopies
Monodelphis domestica ENSMODG0000000353411 retrocopies
Mus musculus ENSMUSG0000006232880 retrocopies
Oryctolagus cuniculus ENSOCUG000000124852 retrocopies
Procavia capensis ENSPCAG000000031038 retrocopies
Pongo abelii ENSPPYG0000000915143 retrocopies
Pteropus vampyrus ENSPVAG0000000196976 retrocopies
Rattus norvegicus ENSRNOG0000001868048 retrocopies
Sarcophilus harrisii ENSSHAG0000000306014 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000000519333 retrocopies
Tarsius syrichta ENSTSYG0000000740220 retrocopies
Tursiops truncatus ENSTTRG0000000579731 retrocopies
Vicugna pacos ENSVPAG000000095681 retrocopy



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